Evidence map›Paper›PMID 41734230›Full record

ArticlePLoS pathogens2026

Detection and characterization of Hepatitis B virus double-stranded linear DNA-derived covalently closed circular DNA in chronic hepatitis B patients.

Hsin-Ni Liu, Elena Kim, Ning Sun, Zhili Wang, ThiThuyTu Nguyen, Fwu-Shan Shieh, Yuanjie Liu, Marc G Ghany, Raymond T Chung, Richard K Sterling and 4 more

Abstract read
In one paragraph

Article in PLoS pathogens, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Hsin-Ni LiuThe Baruch S. Blumberg Institute, Translational Medical Science, Doylestown, Pennsylvania, United States of America.
Elena KimDepartment of Microbiology and Molecular Genetics; Cancer Virology Program, UPMC Hillman Cancer Center, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
Ning SunDepartment of Microbiology and Molecular Genetics; Cancer Virology Program, UPMC Hillman Cancer Center, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
Zhili WangJBS Science Inc, Doylestown, Pennsylvania, United States of America.
ThiThuyTu NguyenThe Baruch S. Blumberg Institute, Translational Medical Science, Doylestown, Pennsylvania, United States of America.
Fwu-Shan ShiehJBS Science Inc, Doylestown, Pennsylvania, United States of America.
Yuanjie LiuDepartment of Microbiology and Molecular Genetics; Cancer Virology Program, UPMC Hillman Cancer Center, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
Marc G GhanyNational Institutes of Health, Liver Diseases Branch, NIDDK, Bethesda, Maryland, United States of America.
Raymond T ChungMassachusetts General Hospital, Harvard Medical School, Liver Center, GI Division, Boston, Massachusetts, United States of America.
Richard K SterlingVirginia Commonwealth University, Gastroenterology and Hepatology, Richmond, Virginia, United States of America.
Selena Y LinJBS Science Inc, Doylestown, Pennsylvania, United States of America.
Haitao GuoDepartment of Microbiology and Molecular Genetics; Cancer Virology Program, UPMC Hillman Cancer Center, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
Daryl T Y LauLiver Center, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, United States of America.
Ying-Hsiu SuThe Baruch S. Blumberg Institute, Translational Medical Science, Doylestown, Pennsylvania, United States of America.ORCID https://orcid.org/0000-0003-0969-0215

Funding

Molecular Mechanisms of HBV cccDNA FormationR01AI110762 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GUO, HAITAO · 2016 to 2025
$3.5M
The Role of HBeAg in HBV PersistenceR01AI134818 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Haitao Guo · 2018 to 2026
$2.7M
Epigenetic Regulation of HBV cccDNA TranscriptionR01AI150255 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GUO, HAITAO · 2020 to 2024
$2.0M
HBV cccDNA and integrated DNA in HIV coinfection and HBV monoinfectionR56AI179574 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI GUO, HAITAO, LAU, DARYL T · 2023 to 2023
$847k
High throughput screening and preclinical development of HBV cccDNA inhibitorsR21AI179929 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GUO, HAITAO · 2024 to 2025
$426k
NIAID NIH HHS R01 AI110762NIAID NIH HHS R01 AI134818NIAID NIH HHS R01 AI150255NIAID NIH HHS R21 AI179929NIAID NIH HHS R56 AI179574
6 · The paper itself

Abstract

BACKGROUND AND

aimsHepatitis B virus (HBV) replication generates a double-stranded linear DNA (dslDNA) byproduct. This dslDNA can undergo intermolecular and intramolecular nonhomologous end-joining (NHEJ) recombination, resulting in viral integration and dslDNA-derived covalently closed circular DNAs (dsl-cccDNAs), respectively. The insertions and deletions (INDELs) at the end-joining site have been used to differentiate dsl-cccDNA from the authentic cccDNA. The prevalence and characteristics of dsl-cccDNA in chronic hepatitis B (CHB) patients remain unclear. APPROACH AND

resultsHBV-targeted next-generation sequencing (NGS) was used to identify 32 dsl-cccDNA-positive candidates, 22 HBeAg(+) and 10 HBeAg(-), from 56 liver biopsies of antiviral treatment-naïve CHB patients for dsl-cccDNA confirmation and characterization by PSAD-cccDNA PCR NGS. INDELs within the DR2-1 region (nt 1600-1840) of the cccDNA were analyzed. Various clonally expanded, heterogenous ~22-nt deletions in the X gene region around nt 1760 were discovered in all 32 samples. The dsl-cccDNA species were then defined and characterized by the INDELs clustered at the DR1 surrounding region (nt 1800-1840). The proportion of dsl-cccDNA in total cccDNA was higher among HBeAg(+) compared to HBeAg(-) samples. The diversity of dsl-cccDNA species positively correlated with cccDNA levels and serum viral load, and was higher in HBeAg(+) CHB.

conclusionsdsl-cccDNA is more abundant and diverse among the HBeAg(+) CHB subjects. The existence of replication-defective dsl-cccDNA may facilitate immune evasion and HBV integration, and complicate HBV pathogenesis.

Indexed as

DNA, CircularDNA, ViralHepatitis B, ChronicHepatitis B virusAdultFemaleHepatitis B e AntigensHigh-Throughput Nucleotide SequencingHumansMaleMiddle AgedVirus ReplicationDNA, CircularDNA, ViralHepatitis B e Antigens

Identifiers

PMID41734230
PMCPMC12952642

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.