Evidence map›Paper›PMID 41730049›Full record

ArticleJournal of chemical theory and computation2026

Accurate and Affordable Vibrational Spectra of Large Molecules: Primary, Auxiliary, and Spectator Modes in a Perturb-then-Diagonalize Framework.

Vincenzo Barone, Federico Lazzari, Marco Mendolicchio

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. VPT2 Calculations of Vibrational Energies of CHThe journal of physical chemistry letters · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Vincenzo BaroneINSTM, via G. Giusti 9, 50121 Firenze, Italy.ORCID 0000-0001-6420-4107
Federico LazzariScuola Superiore Meridionale, Largo San Marcellino 10, 80138 Napoli, Italy.
Marco MendolicchioScuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy.ORCID 0000-0002-4504-853X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vibrational spectra convey a wealth of structural and dynamical information; however, their reliable assignment and interpretation often benefit from the integration of complementary spectroscopic techniques and require the support of accurate quantum chemical calculations. The harmonic approximation is frequently insufficient for quantitative spectroscopy, while fully anharmonic treatments rapidly become computationally prohibitive for large and flexible molecular systems, in particular, for biomolecules. In this framework, we introduce a general perturb-then-diagonalize approach that relies on a three-class partitioning of normal modes into primary, auxiliary, and spectator subsets and combines numerical strategies based on analytical Hessians and analytical gradients. Accurate anharmonic contributions are explicitly included for the modes of primary interest, while the influence of external modes is accounted for through finite differences of analytical gradients, avoiding the much more expensive evaluation of Hessians. Several case studies demonstrate the robustness, ease of use, and accuracy of the proposed approach across a broad range of molecular systems, including situations in which vibrational and rotational spectroscopic data provide complementary information. When combined with a dual-level strategy in which accurate methods are employed for harmonic terms and less expensive methods for anharmonic contributions, the present framework enables vibrational spectra of near-spectroscopic accuracy for biomolecules and other chemically rich systems. More complex environments can be addressed by coupling the method with multilayer approaches.

Identifiers

PMID41730049
PMCPMC12980724

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.