Evidence map›Paper›PMID 41727131›Full record

ArticlebioRxiv : the preprint server for biology2026

Virtual Cells Need Context, Not Just Scale.

Payam Dibaeinia, Sudarshan Babu, Mei Knudson, Ali ElSheikh, Yibo Wen, Han Liu, Jason Perera, Aly A Khan

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Payam DibaeiniaBiohub.
Sudarshan BabuBiohub.
Mei KnudsonBiohub.
Ali ElSheikhNorthwestern University.
Yibo WenNorthwestern University.
Han LiuNorthwestern University.
Jason PereraBiohub.
Aly A KhanBiohub.

Funding

Genetic Mechanisms and Evolution-RenewalT32GM139782 · NIGMS · UNIVERSITY OF CHICAGO · PI Francesca Luca, John Novembre · 2021 to 2026
$5.1M
Unraveling the functional diversity of B cells in health and diseaseDP2AI177884 · NIAID · UNIVERSITY OF CHICAGO · PI Aly Azeem Khan · 2023 to 2026
$1.9M
TGFB-LIKE SIGNALING IN THE PARASITE SCHISTOSOMA MANSONIF32AI010513 · NIAID · CORNELL UNIVERSITY ITHACA · PI BEALL, MELISSA J · 2000 to 2000
$41k
NIAID NIH HHS DP2 AI177884NIAID NIH HHS F32 AI010513NIGMS NIH HHS T32 GM139782
6 · The paper itself

Abstract

The intersection of AI and biology has entered a phase of explosive growth, driven by the ambition to build "Virtual Cells" or computational models capable of predicting cellular responses to any perturbation. Following the success of structural biology (e.g., AlphaFold) and large language models, the field has converged on training massive, high-capacity models on large-scale single-cell data. This position paper argues that scaling model capacity is insufficient to solve the Virtual Cell problem because the primary failure mode is a

Identifiers

PMID41727131
PMCPMC12919078

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.