Evidence map›Paper›PMID 41726991›Full record

ArticlebioRxiv : the preprint server for biology2026

Multiplexed high-content imaging uncovers morphological diversity of lymphocyte activation and dysfunction.

Julie C Matte, Olivier B Bakker, Madeline A Ohl, Francesco Cisternino, Andrea J Manrique-Rincón, Anke Husmann, Florence Lichou, Tong Li, Kwasi Kwakwa, Anneliese O Speak and 5 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Julie C MatteWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1RQ, UK.ORCID 0000-0001-5642-648X
Olivier B BakkerWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1RQ, UK.ORCID 0000-0002-1447-1327
Madeline A OhlWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1RQ, UK.ORCID 0009-0005-5300-3226
Francesco CisterninoHuman Technopole, Viale Rita Levi-Montalcini 1, 20157, Milan, Italy.
Andrea J Manrique-RincónWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1RQ, UK.ORCID 0000-0002-8146-1495
Anke HusmannWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1RQ, UK.ORCID 0000-0001-5326-3785
Florence LichouWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1RQ, UK.ORCID 0000-0002-0993-0576
Tong LiWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1RQ, UK.
Kwasi KwakwaWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1RQ, UK.
Anneliese O SpeakWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1RQ, UK.
Craig A GlastonburyHuman Technopole, Viale Rita Levi-Montalcini 1, 20157, Milan, Italy.ORCID 0000-0001-5542-2225
Omer BayraktarWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1RQ, UK.
Carla P JonesWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1RQ, UK.
Melina ClaussnitzerBroad Institute, 75 Ames Street, Broad Institute of MIT and Harvard, 02142 Cambridge US.ORCID 0000-0003-2450-736X
Gosia TrynkaWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1RQ, UK.ORCID 0000-0002-6955-9529

Funding

ROLE OF DIETARY CONSTITUENTS ON GENE EXPRESSION IN INTESTINAL EPITHELIUMP30DK040561 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Alessio Fasano · 1994 to 2026
$31.6M
Investigating Human Adipocyte HeterogeneityRC2DK116691 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI Orr Ashenberg, Noel P Burtt · 2018 to 2026
$17.8M
Bridging the gap between type 2 diabetes GWAS and therapeutic targetsUM1DK126185 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CLAUSSNITZER, MELINA C, GLOYN, ANNA LOUISE · 2020 to 2024
$9.5M
NIDDK NIH HHS P30 DK040561NIDDK NIH HHS RC2 DK116691NIDDK NIH HHS UM1 DK126185Wellcome Trust
6 · The paper itself

Abstract

Single-cell transcriptomic and proteomic technologies enable molecular profiling of immune cells at scale but provide limited access to cellular phenotypes shaped by spatial organisation, organelle architecture and cytoskeletal remodelling. Here we present TGlow, a scalable high-content imaging platform optimized for systematic single-cell phenotyping of primary human lymphocytes. TGlow integrates cyclic immunofluorescence, deep z-stack confocal imaging, and open-source data processing pipelines, including both classical and self-supervised vision transformer-based feature extraction, to jointly quantify cellular morphology, organelle organization, and immune activation states. Applied across over 400,000 primary human T cells spanning CD4

Identifiers

PMID41726991
PMCPMC12918823

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.