Evidence map›Paper›PMID 41725513›Full record

ArticleHuman molecular genetics2026

Multi-omics investigation of thyroid development and dysfunction in down syndrome.

Peter Lauffer, Nitash Zwaveling-Soonawala, Andrew Y F Li Yim, Liselot van der Laan, Shama van Zelderen-Bhola, Andrea M Venema, Adri N Mul, Marianna Bugiani, Esther Siteur-van Rijnstra, Quinn D Gunst and 5 more

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Article in Human molecular genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Peter LaufferDepartment of Pediatric Endocrinology, Emma Children's Hospital, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.ORCID 0000-0002-1174-7340
Nitash Zwaveling-SoonawalaDepartment of Pediatric Endocrinology, Emma Children's Hospital, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.ORCID 0000-0003-0318-5541
Andrew Y F Li YimDepartment of Human Genetics, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.
Liselot van der LaanDepartment of Human Genetics, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.
Shama van Zelderen-BholaDepartment of Human Genetics, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.
Andrea M VenemaDepartment of Human Genetics, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.
Adri N MulDepartment of Human Genetics, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.
Marianna BugianiDepartment of Pathology, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.
Esther Siteur-van RijnstraExperimental Immunology, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.
Quinn D GunstDepartment of Medical Biology, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.
Maurice J B van den HoffDepartment of Medical Biology, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.
Bernadette S de BakkerDepartment of Obstetrics and Gynecology, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.
Anita BoelenAmsterdam Gastroenterology Endocrinology Metabolism (AGEM) Research Institute, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.ORCID 0000-0002-4994-2918
Peter HennemanDepartment of Human Genetics, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.ORCID 0000-0003-2179-7808
A S Paul van TrotsenburgDepartment of Pediatric Endocrinology, Emma Children's Hospital, Amsterdam University Medical Center, University of Amsterdam, Meibergdreef 9, Amsterdam, AZ, 1105, Netherlands.ORCID 0000-0002-9677-7441

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDown syndrome (DS), caused by trisomy of chromosome 21, is associated with a high prevalence of congenital non-autoimmune thyroid dysfunction, typically characterized by an elevated serum thyroid stimulating hormone (TSH) concentration. Early-life observational studies and fetal cordocentesis data, consistently reporting elevated TSH levels, suggest a developmental origin. However, the underlying pathophysiological mechanism remains unclear. This study aimed to investigate the molecular and developmental features underlying thyroid dysfunction in DS.

methodsThyroid tissue of fetuses with DS (n = 4) and fetuses without a genetic/developmental abnormality (n = 5) were analyzed using histology, bulk RNA sequencing (RNA-seq), and DNA methylation (DNAm) profiling.

resultsHistological analysis revealed underdevelopment of DS fetal thyroid tissue, with smaller follicles and greater heterogeneity. RNA-seq identified 1035 differentially expressed genes (DEGs) distributed across the genome. Notably, three thyroid-relevant genes, FOXE1, IYD, and DIO2, were significantly downregulated in DS tissue. Gene set enrichment analysis (GSEA) showed widespread disruption of cellular processes. DNAm analysis identified 266 differentially methylated regions (DMRs), several of which overlapped with loci previously implicated in DS. Integration of expression and DNAm data revealed 20 significant integrative methylation-expression analysis associations, indicating cis-regulatory DNAm effects on gene expression.

conclusionsThese findings suggest that congenital thyroid dysfunction in DS represents a DS-specific form of thyroid dysfunction, characterized by impaired thyroid development and altered expression and regulation of genes involved in thyroid function and general cellular processes. The genome-wide molecular changes observed likely result from gene dosage effects and systemic (epi)genomic disturbances caused by trisomy 21.

Indexed as

Down SyndromeThyroid GlandDNA MethylationFemaleFetusForkhead Transcription FactorsGene Expression ProfilingGene Expression Regulation, DevelopmentalHumansIodide PeroxidaseIodothyronine Deiodinase Type IIMultiomicsThyrotropinForkhead Transcription FactorsFOXE1 protein, humanIodide PeroxidaseIodothyronine Deiodinase Type IIThyrotropinDNA methylationDown syndromehypothyroidismintegrative methylation–expression analysisRNA sequencing

Identifiers

PMID41725513
PMCPMC13036834

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.