Evidence map›Paper›PMID 41720793›Full record

ArticleNature communications2026

Epigenetic profiling of hematopoietic stem cells from male mice identifies KDR and PU.1 as regulators of aging transcriptome and caloric restriction response.

Le Zong, Bongsoo Park, Ferda Tekin-Turhan, Wakako Kuribayashi, Mayuri Tanaka-Yano, Keefer Li, Isabel Beerman

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Le ZongTranslational Gerontology Branch, National Institute on Aging, Baltimore, MD, USA.
Bongsoo ParkTranslational Gerontology Branch, National Institute on Aging, Baltimore, MD, USA.
Ferda Tekin-TurhanTranslational Gerontology Branch, National Institute on Aging, Baltimore, MD, USA.ORCID http://orcid.org/0000-0002-6749-9219
Wakako KuribayashiTranslational Gerontology Branch, National Institute on Aging, Baltimore, MD, USA.
Mayuri Tanaka-YanoTranslational Gerontology Branch, National Institute on Aging, Baltimore, MD, USA.ORCID http://orcid.org/0000-0001-6309-3273
Keefer LiTranslational Gerontology Branch, National Institute on Aging, Baltimore, MD, USA.
Isabel BeermanTranslational Gerontology Branch, National Institute on Aging, Baltimore, MD, USA. isabel.beerman@nih.gov.ORCID http://orcid.org/0000-0002-7758-8231

Funding

U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) Intramural
6 · The paper itself

Abstract

Caloric restriction (CR) provides anti-aging benefits but has also been reported to be associated with reduced immune function, and how hematopoietic stem cells (HSCs) potentially contribute to this decline remains unclear. Using lifelong and short-term CR in male mice, we found reducing the energy supply decreases total white blood cell production and shifts hematopoiesis towards myeloid and thrombo-erythroid lineages, prioritizing cells essential for survival (red blood cells, platelets, innate immune cells) over adaptive immunity. HSCs under CR enter cell cycle to support myeloid differentiation rather than self-renewal. Lifelong CR inhibits age-associated transcriptome changes in HSCs, though age-associated profiles appear shortly after ad libitum feeding. Epigenetic profiling identified KDR as a key CR response regulator, and Kdr knockdown in aged HSCs recapitulated the youthful transcriptome of lifelong CR HSCs. Finally, we show PU.1 acts as an intracellular regulator of CR response, controlling HSC self-renewal and differentiation through increased target gene binding under CR conditions.

Indexed as

AgingCaloric RestrictionEpigenesis, GeneticHematopoietic Stem CellsProto-Oncogene ProteinsTrans-ActivatorsTranscriptomeVascular Endothelial Growth Factor Receptor-2AnimalsCell DifferentiationGene Expression ProfilingHematopoiesisMaleMiceMice, Inbred C57BLProto-Oncogene Protein Spi-1Proto-Oncogene ProteinsProto-Oncogene Protein Spi-1Trans-ActivatorsVascular Endothelial Growth Factor Receptor-2

Identifiers

PMID41720793
PMCPMC13035812

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.