Evidence map›Paper›PMID 41720772›Full record

ArticleNature communications2026

In situ structures of the portal-neck-tail complex of bacteriophage T4 inform a viral genome positioning mechanism.

Andrei Fokine, Jingen Zhu, Thomas Klose, Frank Vago, Charles-Adrien Arnaud, Zhiqing Wang, Baldeep Khare, Michael G Rossmann, Zhenguo Chen, Lei Sun and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Andrei FokineDepartment of Biological Sciences, Purdue University, West Lafayette, IN, USA. afokine@purdue.edu.ORCID 0000-0001-9349-1619
Jingen ZhuBacteriophage Medical Research Center, Department of Biology, The Catholic University of America, Washington, DC, USA.
Thomas KloseDepartment of Biological Sciences, Purdue University, West Lafayette, IN, USA.ORCID 0000-0002-2150-9792
Frank VagoDepartment of Biological Sciences, Purdue University, West Lafayette, IN, USA.
Charles-Adrien ArnaudDepartment of Biological Sciences, Purdue University, West Lafayette, IN, USA.
Zhiqing WangDepartment of Biological Sciences, Purdue University, West Lafayette, IN, USA.
Baldeep KhareDepartment of Biological Sciences, Purdue University, West Lafayette, IN, USA.ORCID 0000-0002-7415-0058
Michael G RossmannDepartment of Biological Sciences, Purdue University, West Lafayette, IN, USA.
Zhenguo ChenShanghai Fifth People's Hospital and Institutes of Biomedical Sciences, Fudan University, Shanghai, China.ORCID 0000-0003-4748-9299
Lei SunShanghai Fifth People's Hospital and Institutes of Biomedical Sciences, Fudan University, Shanghai, China.ORCID 0000-0001-8741-0202
Qianglin FangSchool of Public Health (Shenzhen), Sun Yat-sen University, Shenzhen, Guangdong, China.ORCID 0000-0003-1844-7313
Richard J KuhnDepartment of Biological Sciences, Purdue University, West Lafayette, IN, USA.ORCID 0000-0003-4148-1026
Venigalla B RaoBacteriophage Medical Research Center, Department of Biology, The Catholic University of America, Washington, DC, USA. rao@cua.edu.ORCID 0000-0002-0777-6587

Funding

Engineering Bacteriophage T4 as a Targeted Gene Therapy Drug for in vivo HIV CureDP1DA060580 · NIDA · CATHOLIC UNIVERSITY OF AMERICA · PI Venigalla B. Rao · 2024 to 2026
$3.0M
Structural Mechanisms Of Genome Flow In Bacteriophage T4 And Their Biomedical ApplicationsR01AI175340 · NIAID · CATHOLIC UNIVERSITY OF AMERICA · PI Venigalla B. Rao · 2023 to 2026
$1.9M
NIAID NIH HHS R01 AI175340NIDA NIH HHS DP1 DA060580NSF | BIO | Division of Molecular and Cellular Biosciences (MCB) MCB-0923873U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) AI175340U.S. Department of Health & Human Services | NIH | National Institute on Drug Abuse (NIDA) DP1DA060580
6 · The paper itself

Abstract

The post-genome packaging mechanisms that govern the assembly of an infectious virion are poorly understood in bacteriophages and other viruses. Here, our near-atomic resolution cryo-EM structural analyses uncovered an assembly- and conformation-driven genome positioning mechanism in the tailed bacteriophage T4. We show that following headful packaging, which generates a pressurized head, a global conformational change occurs in the portal structure, probably triggering packaging termination and ejection of the packaging motor. Our high-resolution structures of the neck of the virion further show that the neck undergoes conformational changes upon docking of a pre-assembled tail onto the sealed neck, which then opens a genome-gate. Driven by the pressure of the packaged DNA, the genome travels through open neck channels, binds and compresses the resident tape-measure protein, and halts at the bottom of the second topmost disk of the tail tube. Pressure-suspended within the virion's innermost tunnel and secured by a baseplate plug, the genome remains poised to flow through the tunnel into a host cell upon receiving the host receptor recognition signal.

Indexed as

Bacteriophage T4Genome, ViralViral Genome PackagingVirus AssemblyCryoelectron MicroscopyDNA, ViralModels, MolecularVirionDNA, Viral

Identifiers

PMID41720772
PMCPMC12929629

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.