Evidence map›Paper›PMID 41716219›Full record

ArticleFrontiers in bioinformatics2025

Mutational insights and

Fouzia Nawab, Wafa Naeem, Sadia Fatima, Muhammad Uzair Khan, Aamir Mehmood, Sadia Nawab, Ishaq Khan, Haseena Nawaz, Hilal Ahmad, Ali Talha Khalil and 5 more

Abstract read
In one paragraph

Article in Frontiers in bioinformatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Fouzia NawabInstitute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Wafa NaeemInstitute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Sadia FatimaInstitute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Muhammad Uzair KhanInstitute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Aamir MehmoodDepartment of Bioinformatics and Biostatistics, State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Sadia NawabSchool of Food Science and Engineering, South China University of Technology, Guangzhou, China.
Ishaq KhanInstitute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Haseena NawazInstitute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Hilal AhmadInstitute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Ali Talha KhalilDepartment of Pathology, Lady Reading Hospital Medical Teaching Institution (LRH-MTI), Peshawar, Pakistan.
Ishtiaq Ahmad KhanJamil-ur-Rahman Center for Genome Research, Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, Pakistan.
Muhammad IrfanJamil-ur-Rahman Center for Genome Research, Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, Pakistan.
Mohammed AloriniDepartment of Pathology, College of Medicine, Qassim University, Buraidah, Saudi Arabia.
Syed Ali KhurramUnit of Oral and Maxillofacial Pathology, School of Clinical Dentistry, University of Sheffield, Sheffield, United Kingdom.
Asif AliDepartment of Pathology, College of Medicine, Qassim University, Buraidah, Saudi Arabia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Oral squamous cell carcinoma (OSCC) is a prevalent malignancy characterized by aggressive behavior, poor prognosis, and limited therapeutic options. Mutations in the NIMA-related kinase (NEK) family are increasingly implicated in tumorigenesis across various cancers. However, their contributions to OSCC pathogenesis remain largely unexplored. Methods: Here, we employed whole-exome sequencing (WES) of formalin-fixed paraffin-embedded (FFPE) tissue blocks from 31 OSCC tumors and 9 adjacent paired normal samples derived from patients of Khyber Pakhtunkhwa (KP), Pakistan, to systematically profile Results: We identified 46 mutations overall (78.3% (36/46) somatic, 21.7% (10/46) germline), consisting of 82.6% (38/46) non-synonymous single-nucleotide variants (SNVs), 10.9% (5/46) frameshift deletions, 2.2% (1/26) non-frameshift deletions, and 4.3% (2/46) stop-gain mutations; notably, 10.9% (5/46) represented novel variants (not reported previously). NEK1 displayed the highest mutation frequency, followed by Conclusion: Collectively, these findings suggest

Indexed as

biomarkersin silico analysisNEK genesOral squamous cell carcinoma (OSCC)whole exome sequencing (WES)

Identifiers

PMID41716219
PMCPMC12913394

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.