Evidence map›Paper›PMID 41716188›Full record

ArticleiScience notes2024

SINGLE MOLECULE 3D STRUCTURES DETERMINED BY INDIVIDUAL-PARTICLE ELECTRON TOMOGRAPHY.

Gang Ren

Abstract read
In one paragraph

Article in iScience notes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Gang RenThe Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.ORCID 0000-0002-8036-2321

Funding

STRUCTURAL ANALYSIS OF THE MANNOSE 6-PHOSPHATE RECEPTORSR01DK042667 · NIDDK · MEDICAL COLLEGE OF WISCONSIN · PI DAHMS, NANCY M. · 1997 to 2023
$9.8M
Synaptic Organizers: Dynamic Regulation of Trans-synaptic BridgesR01MH077303 · NIMH · UNIVERSITY OF TEXAS MED BR GALVESTON · PI Gabrielle Rudenko · 2006 to 2026
$8.2M
Structure-Function Relationship Studies of the Plasma Lipid Transfer Proteins CETP and PLTPR01HL115153 · NHLBI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI REN, GANG · 2012 to 2021
$3.9M
Lipoprotein Structure and Function by Individual Particle Electron TomographyR01GM104427 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI REN, GANG · 2013 to 2016
$1.3M
NHLBI NIH HHS R01 HL115153NIDDK NIH HHS R01 DK042667NIGMS NIH HHS R01 GM104427NIMH NIH HHS R01 MH077303
6 · The paper itself

Abstract

Macromolecules, such as proteins and nucleic acids, play essential roles in cellular functions through dynamic structural changes. Understanding these functions requires detailed characterization of structural dynamics. While techniques like X-ray crystallography and cryo-EM resolve high-resolution static structures, they struggle to capture low-resolution, flexible structures and the full distribution of conformations during chemical reactions. These limitations arise from averaging processes that enhance signal-to-noise ratio (SNR) but exclude flexible regions, distort resolution, and miss rare high-energy states. To address this, we developed individual-particle electron tomography (IPET), a method for determining 3D structures of single particles at low-to-intermediate resolution (up to 2 nm) without averaging. IPET reconstructs a detailed 3D density map by capturing images at multiple tilt angles, facilitating flexible model fitting and revealing unique particle structures. This method reveals unbiased structural distributions, enhancing the study of molecular dynamics, phase transitions, and structural alterations during chemical reactions and self-folding.

Identifiers

PMID41716188
PMCPMC12916139

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.