Evidence map›Paper›PMID 41714716›Full record

ArticleScientific reports2026

An open-source deep learning-based toolbox for automated auditory brainstem response analyses (ABRA).

Abhijeeth Erra, Cayla M Miller, Jeffrey Chen, Elena Chrysostomou, Shannon Barret, Yasmin M Kassim, Rick A Friedman, Amanda Lauer, Federico Ceriani, Walter Marcotti and 2 more

Abstract read
In one paragraph

Article in Scientific reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Abhijeeth Erra *Data Institute, University of San Francisco, San Francisco, CA, USA.
Cayla M Miller *Department of Cell & Developmental Biology, University of California San Diego, La Jolla, CA, USA.
Jeffrey Chen *Data Institute, University of San Francisco, San Francisco, CA, USA.
Elena ChrysostomouDepartment of Cell & Developmental Biology, University of California San Diego, La Jolla, CA, USA.
Shannon BarretDepartment of Cell & Developmental Biology, University of California San Diego, La Jolla, CA, USA.
Yasmin M KassimDepartment of Cell & Developmental Biology, University of California San Diego, La Jolla, CA, USA.
Rick A FriedmanDepartment of Otolaryngology, University of California San Diego, La Jolla, CA, USA.
Amanda LauerDepartments of Otolaryngology-Head and Neck Surgery and Neuroscience, Center for Functional Anatomy and Evolution, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Federico CerianiSchool of Biosciences, University of Sheffield, Sheffield, S10 2TN, UK.
Walter MarcottiSchool of Biosciences, University of Sheffield, Sheffield, S10 2TN, UK.
Cody CarrollData Institute, University of San Francisco, San Francisco, CA, USA.
Uri ManorDepartment of Cell & Developmental Biology, University of California San Diego, La Jolla, CA, USA. uri@ucsd.edu.

Funding

Investigating the mechanisms of stereocilia length regulation and innovative strategies for restoring hearingR01DC021075 · NIDCD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Uri Manor · 2023 to 2026
$3.2M
Biotechnology and Biological Sciences Research Council BB/V006681/1Chan Zuckerberg Initiative DAF CZI Imaging Scientist Award DOI:10.37921/694870itnyzkNIDCD NIH HHS R018566-03S1NIDCD NIH HHS R01 DC021075NSF NeuroNex 2014862Royal National Institute for Deaf People Innovation Seed Fund (F115)
6 · The paper itself

Abstract

Hearing loss is a pervasive global health challenge with profound impacts on communication, cognitive function, and quality of life. Recent studies have established age-related hearing loss as a significant risk factor for dementia, highlighting the importance of hearing loss research. Auditory brainstem responses (ABRs), which are electrophysiological recordings of acoustically evoked synchronized neural activity from the auditory nerve and brainstem, serve as in vivo correlates for sensory hair cell and synaptic function, hearing sensitivity, and other critical readouts of auditory pathway physiology, making them highly valuable for both basic neuroscience and clinical research. Despite the utility of the ABR, traditional ABR analyses rely heavily on subjective manual interpretation, which may introduce variability and pose challenges for reproducibility across studies. Here, we introduce Auditory Brainstem Response Analyzer (ABRA), a novel suite of open-source ABR analysis tools powered by deep learning, which automates and standardizes ABR waveform analysis. ABRA employs convolutional neural networks trained on diverse datasets collected from multiple experimental settings, achieving rapid and unbiased extraction of key ABR metrics, including peak amplitude, latency, and auditory threshold estimates. We demonstrate that ABRA’s deep learning models provide performance comparable to expert human annotators while dramatically reducing analysis time and enhancing reproducibility across datasets from different laboratories. By bridging hearing research, sensory neuroscience, and advanced computational techniques, ABRA facilitates broader interdisciplinary insights into auditory function. An online version of the tool is available for use at no cost at https://abra.ucsd.edu .

Indexed as

Deep LearningEvoked Potentials, Auditory, Brain StemAcoustic StimulationAnimalsAuditory ThresholdBrain StemConvolutional Neural NetworksHearing LossHumansReproducibility of Results

Identifiers

PMID41714716
PMCPMC13018588

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.