Evidence map›Paper›PMID 41714633›Full record

ArticleNature communications2026

A spatially resolved human glioblastoma atlas reveals distinct cellular and molecular patterns of anatomical niches.

Pranali Sonpatki, Hyun Jung Park, Yao Lulu Xing, Kyung Yeon Han, Brett A Schroeder, Hyeon Jong Yu, Hye Jin Kim, Tamrin Chowdhury, Jong Ha Hwang, Sun Mo Nam and 15 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Pranali Sonpatki *Amaranth Medical Analytics, Bangalore, India.
Hyun Jung Park *Samsung Genome Institute, Samsung Medical Center, Seoul, Republic of Korea.
Yao Lulu XingDepartment of Neurosurgery, Stanford School of Medicine, Stanford, CA, USA.
Kyung Yeon HanSamsung Genome Institute, Samsung Medical Center, Seoul, Republic of Korea.
Brett A SchroederNational Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Hyeon Jong YuDepartment of Neurosurgery, Seoul National University Hospital, Seoul, Republic of Korea.
Hye Jin KimDepartment of Neurosurgery, Seoul National University Hospital, Seoul, Republic of Korea.
Tamrin ChowdhuryDepartment of Neurosurgery, Seoul National University Hospital, Seoul, Republic of Korea.ORCID http://orcid.org/0000-0002-6747-6316
Jong Ha HwangDepartment of Neurosurgery, Seoul National University Hospital, Seoul, Republic of Korea.
Sun Mo NamDepartment of Neurosurgery, Seoul National University Hospital, Seoul, Republic of Korea.
Yoon Hwan ByunDepartment of Neurosurgery, Seoul National University Hospital, Seoul, Republic of Korea.
Ho KangDepartment of Neurosurgery, Seoul National University Hospital, Seoul, Republic of Korea.ORCID http://orcid.org/0000-0003-2143-410X
Joo Ho LeeSeoul National University College of Medicine, Seoul, Republic of Korea.
Soon-Tae LeeSeoul National University College of Medicine, Seoul, Republic of Korea.ORCID http://orcid.org/0000-0003-4767-7564
Jae-Kyung WonSeoul National University College of Medicine, Seoul, Republic of Korea.
Tae Min KimSeoul National University College of Medicine, Seoul, Republic of Korea.ORCID http://orcid.org/0000-0001-6145-4426
Seung Hong ChoiSeoul National University College of Medicine, Seoul, Republic of Korea.
Ja-Lok KuSeoul National University College of Medicine, Seoul, Republic of Korea.ORCID http://orcid.org/0000-0002-7090-537X
Sungyoung LeeDepartment of Genomic Medicine, Seoul National University Hospital, Seoul, Republic of Korea.
Hongseok YunDepartment of Genomic Medicine, Seoul National University Hospital, Seoul, Republic of Korea.
Sung-Hye ParkSeoul National University College of Medicine, Seoul, Republic of Korea.ORCID http://orcid.org/0000-0002-8681-1597
Claudia K PetritschDepartment of Neurology and Neurological Sciences, Stanford University, Palo Alto, CA, USA.ORCID http://orcid.org/0000-0002-3442-4974
Chul-Kee ParkDepartment of Neurosurgery, Seoul National University Hospital, Seoul, Republic of Korea. nsckpark@snu.ac.kr.ORCID http://orcid.org/0000-0002-2350-9876
Woong-Yang ParkSamsung Genome Institute, Samsung Medical Center, Seoul, Republic of Korea. woongyang@g.skku.edu.
Nameeta ShahAmaranth Medical Analytics, Bangalore, India. nameeta.shah@gmail.com.ORCID http://orcid.org/0000-0002-4429-8414

Funding

Korea Health Industry Development Institute (KHIDI) HR20C0025National Research Foundation of Korea (NRF) NRF-2017M3A9A7050803National Research Foundation of Korea (NRF) RS-2024-00335143National Research Foundation of Korea (NRF) RS-2024-00357204Seoul National University 550-20230104
6 · The paper itself

Abstract

Glioblastoma is an aggressive brain cancer with limited treatment options and poor patient survival, driven in part by cellular diversity within tumors. While individual cell types have been catalogued, how malignant, vascular, and immune cells are spatially organized inside human tumors remains incompletely understood. Here we show a spatially resolved, multi-modal atlas of human glioblastoma that integrates gene expression profiling across tissue sections with matched single-cell and protein measurements at subcellular resolution. Using a targeted 348 gene panel enriched for vascular and stromal markers, we identify less well-characterized endothelial, perivascular, and fibroblast-like cell states and define their spatial associations with malignant and immune compartments. We further identify a distinct oligodendrocyte population restricted to tumor core and perivascular regions that exhibits gene expression patterns associated with tumor recurrence and poor clinical outcome. This publicly accessible atlas provides a high-resolution framework for studying the spatial organization of glioblastoma and highlights region-specific cellular interactions that may represent therapeutically actionable vulnerabilities.

Indexed as

Brain NeoplasmsGlioblastomaBiomarkers, TumorGene Expression ProfilingGene Expression Regulation, NeoplasticHumansNeoplasm Recurrence, LocalOligodendrogliaTumor MicroenvironmentBiomarkers, Tumor

Identifiers

PMID41714633
PMCPMC13031279

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.