Evidence map›Paper›PMID 41712008›Full record

ArticleJournal of medical systems2026

Comorbidity Classification from Clinical Free-Text using Large Language Models: Application to Sleep Disorder Patients.

Yihan Deng, Fabio Dennstädt, Irina Filchenko, Julia van der Meer, Xiaoli Yang, Markus H Schmidt, Claudio L A Bassetti, Athina Tzovara, Kerstin Denecke

Abstract read
In one paragraph

Article in Journal of medical systems, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Performance of nine large language models on real-world polysomnography interpretation for obstructive sleep apnea: a multi-dimensional comparative analysis.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yihan DengDepartment Engineering and Computer Science, Institute Patient-centered Digital Health, Bern University of Applied Sciences, Quellgasse 21, Biel, 2502, Switzerland.
Fabio DennstädtDepartment of Radiation Oncology, University Hospital and University of Bern, Inselspital, Freiburgstrasse 18, Bern, 3010, Bern, Switzerland.
Irina FilchenkoDepartment of Neurology, Inselspital, University Hospital and University of Bern, Freiburgstrasse 16, Bern, 3010, Bern, Switzerland.
Julia van der MeerDepartment of Neurology, Inselspital, University Hospital and University of Bern, Freiburgstrasse 16, Bern, 3010, Bern, Switzerland.
Xiaoli YangDepartment of Neurology, Inselspital, University Hospital and University of Bern, Freiburgstrasse 16, Bern, 3010, Bern, Switzerland.
Markus H SchmidtDepartment of Neurology, Inselspital, University Hospital and University of Bern, Freiburgstrasse 16, Bern, 3010, Bern, Switzerland.
Claudio L A BassettiDepartment of Neurology, Inselspital, University Hospital and University of Bern, Freiburgstrasse 16, Bern, 3010, Bern, Switzerland.
Athina TzovaraDepartment of Neurology, Inselspital, University Hospital and University of Bern, Freiburgstrasse 16, Bern, 3010, Bern, Switzerland.
Kerstin DeneckeDepartment Engineering and Computer Science, Institute Patient-centered Digital Health, Bern University of Applied Sciences, Quellgasse 21, Biel, 2502, Switzerland. kerstin.denecke@bfh.ch.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Patients presenting to neurology clinics commonly have a complex history of comorbidities and partially documented health trajectories, making it essential to reliably extract comorbidity information from historical records. However, existing extraction methods, ranging from rule-based systems to classical machine learning (ML), often have limited accuracy, scalability, or adaptability across diverse documents. We present a large language model (LLM)–based framework for comorbidity extraction from diagnostic texts, capable of handling various prompt formats and textual sources such as patient history, comorbidities, and sleep assessments. The instruction fine-tuned Mistral-24B (Instruct-2501) model achieves 95% macro classification accuracy and 92% F1 score across six common classes of comorbidities, achieving strong performance that is competitive with metrics reported in prior clinical phenotyping and information extraction studies, while complementing recent transformer-based clinical NLP frameworks. The proposed method extracts comorbidities through a transparent hierarchical approach, thereby supporting clinical analysis and providing interpretable insights for disease modeling and personalized treatment planning in sleep medicine.

Indexed as

ComorbidityLarge Language ModelsSleep Wake DisordersClassification AlgorithmsHumansMachine LearningComorbidity extractionLarge language modelLLMPrompt-based classificationSleep diagnostics

Identifiers

PMID41712008
PMCPMC12920282

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.