Evidence map›Paper›PMID 41709287›Full record

ArticleJournal of animal science and biotechnology2026

Dynamics of tryptophan metabolites and microbial adaptations during corn by-product fermentation in the pig gut microbiome.

Eita Toyoshi, Masahiro Watanabe, Fu Namai, Kenji Yamane, Toma Kashima, Wakako Ikeda-Ohtsubo, Afifah Zahra Agista, Ayu Yoshida, Taiga Sakuma, Itsuko Fukuda and 14 more

Abstract read
In one paragraph

Article in Journal of animal science and biotechnology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Eita ToyoshiFood and Feed Immunology Group, Laboratory of Animal Food Function, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan.
Masahiro WatanabeGraduate School of Pharmaceutical Sciences, Tohoku University, Sendai, 980-8574, Japan.
Fu NamaiFood and Feed Immunology Group, Laboratory of Animal Food Function, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan.
Kenji YamaneNihon Shokuhin Kako Co., Ltd., 30 Tajima, Fuji, Shizuoka, 417-8530, Japan.
Toma KashimaDepartment of Biotechnology, The University of Tokyo, Bunkyo-Ku, Tokyo, 113-8657, Japan.
Wakako Ikeda-OhtsuboFood and Feed Immunology Group, Laboratory of Animal Food Function, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan.
Afifah Zahra AgistaLivestock Immunology Unit, International Education and Research Centre for Food and Agricultural Immunology (CFAI), Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan.
Ayu YoshidaFood and Feed Immunology Group, Laboratory of Animal Food Function, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan.
Taiga SakumaFood and Feed Immunology Group, Laboratory of Animal Food Function, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan.
Itsuko FukudaDepartment of Agrobioscience, Graduate School of Agricultural Science, Kobe University, Nada-Ku, Kobe, Hyogo, 657-8501, Japan.
Kasumi SuzukiFood and Feed Immunology Group, Laboratory of Animal Food Function, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan.
Gou YoshiokaSwine and Poultry Research Department, Gifu Prefectural Livestock Research Institute, Seki, 501-3924, Japan.
Yuji ImaiMiyagi Prefecture Animal Industry Experiment Station, Osaki, Miyagi, 989-6445, Japan.
Sae TsuchidaBiotechnological Research Support Division, FASMAC Co., Ltd., Atsugi, 243-0041, Japan.
Eri NishiyamaBiotechnological Research Support Division, FASMAC Co., Ltd., Atsugi, 243-0041, Japan.
Hiroki ShinkaiNational Institute of Animal Health, National Agriculture and Food Research Organization, Tsukuba, 305-0856, Japan.
Yoshihiro MunetaNational Institute of Animal Health, National Agriculture and Food Research Organization, Tsukuba, 305-0856, Japan.
Hirohide UenishiInstitute of Agrobiological Sciences, National Agriculture and Food Research Organization, Tsukuba, 305-8634, Japan.
Ryuta TobeLaboratory of Animal Microbiology, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan.
Hitoshi ShirakawaLivestock Immunology Unit, International Education and Research Centre for Food and Agricultural Immunology (CFAI), Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan.
Masamitsu MaekawaGraduate School of Pharmaceutical Sciences, Tohoku University, Sendai, 980-8574, Japan.
Nariyasu ManoGraduate School of Pharmaceutical Sciences, Tohoku University, Sendai, 980-8574, Japan.
Haruki KitazawaFood and Feed Immunology Group, Laboratory of Animal Food Function, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan. haruki.kitazawa.c7@tohoku.ac.jp.
Keita NishiyamaFood and Feed Immunology Group, Laboratory of Animal Food Function, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan. keita.nishiyama.a6@tohoku.ac.jp.

Funding

Bio-oriented Technology Research Advancement Institution (BRAIN) Development of Innovative Technology grant (JPJ007097)Japan Society for the Promotion of Science (JSPS) Grant-in-Aid for Challenging Research (Exploratory) (23K18072)Japan Society for the Promotion of Science (JSPS) Grant-in-Aid for Scientific Research (B) (23K27051)
6 · The paper itself

Abstract

backgroundFood by-products, such as corn germ meal from starch processing, are increasingly used as sustainable feed supplements, reducing competition between food and feed and supporting the valorisation of food waste. However, their effects on gut microbial metabolism and host health remain unclear. This study aimed to determine how corn germ meal fermentation influences microbial community structure and metabolite production using an ex vivo pig faecal culture system.

resultsCorn germ meal supplementation significantly altered the microbial composition, increasing diversity and enriching fibre-degrading Prevotellaceae, a key bacterial family involved in complex carbohydrate metabolism. Metabolomic analysis revealed marked increases in tryptophan-derived metabolites, including indoleacrylic acid, indolepropionic acid, and indolelactic acid, which act as ligands for the aryl hydrocarbon receptor and have anti-inflammatory properties. Prevotella-mediated catabolite repression reduced Escherichia coli-derived indole formation, redirecting microbial tryptophan metabolism toward the production of these bioactive compounds. Microbial and metabolic responses differed among farms, reflecting farm-specific microbiome structures.

conclusionsCorn germ meal supplementation reshapes gut microbial communities, enhances metabolic activity, and promotes the generation of bioactive tryptophan metabolites with potential immunomodulatory effects. These findings highlight the value of corn by-products as dietary fibres that can drive beneficial microbial cross-feeding and influence host intestinal homeostasis. Although demonstrated in an ex vivo setting, this study provides a mechanistic basis and preclinical evidence for future in vivo studies, supporting the sustainable utilisation of food industry by-products to improve gut health and resource efficiency in livestock production.

Indexed as

Aromatic amino acid metabolismAryl hydrocarbon receptorCorn germ mealEx vivo fermentationMicrobial metabolitesSustainable feed ingredientsSwine nutrition

Identifiers

PMID41709287
PMCPMC12914897

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.