Evidence map›Paper›PMID 41709047›Full record

ArticleNature structural & molecular biology2026

Structure and mechanism of antiphage retron Eco2.

M Jasnauskaitė, J Juozapaitis, T Liegutė, R Grigaitis, A Skorupskaitė, W Steinchen, A Mikšys, L Truncaitė, K Kazlauskaitė, M F Torres Jiménez and 6 more

Erratum issuedAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

M JasnauskaitėLSC-EMBL Partnership Institute for Genome Editing Technologies, Life Sciences Center, Vilnius University, Vilnius, Lithuania.ORCID http://orcid.org/0009-0008-2445-6754
J JuozapaitisInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.
T LiegutėInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.ORCID http://orcid.org/0009-0007-7643-180X
R GrigaitisLSC-EMBL Partnership Institute for Genome Editing Technologies, Life Sciences Center, Vilnius University, Vilnius, Lithuania.ORCID http://orcid.org/0000-0002-9528-360X
A SkorupskaitėLSC-EMBL Partnership Institute for Genome Editing Technologies, Life Sciences Center, Vilnius University, Vilnius, Lithuania.ORCID http://orcid.org/0000-0002-4124-4453
W SteinchenCenter for Synthetic Microbiology (SYNMIKRO) & Department of Chemistry, Philipps-University Marburg, Marburg, Germany.
A MikšysLSC-EMBL Partnership Institute for Genome Editing Technologies, Life Sciences Center, Vilnius University, Vilnius, Lithuania.ORCID http://orcid.org/0000-0002-6951-6449
L TruncaitėInstitute of Biochemistry, Life Sciences Center, Vilnius University, Vilnius, Lithuania.ORCID http://orcid.org/0000-0001-7516-2854
K KazlauskaitėLSC-EMBL Partnership Institute for Genome Editing Technologies, Life Sciences Center, Vilnius University, Vilnius, Lithuania.ORCID http://orcid.org/0009-0002-8735-2190
M F Torres JiménezInstitute of Biosciences, Life Sciences Center, Vilnius University, Vilnius, Lithuania.ORCID http://orcid.org/0000-0002-7177-4164
S KhochareLSC-EMBL Partnership Institute for Genome Editing Technologies, Life Sciences Center, Vilnius University, Vilnius, Lithuania.
G DudasInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.
G BangeCenter for Synthetic Microbiology (SYNMIKRO) & Department of Chemistry, Philipps-University Marburg, Marburg, Germany.ORCID http://orcid.org/0000-0002-7826-0932
L MalinauskaitėLSC-EMBL Partnership Institute for Genome Editing Technologies, Life Sciences Center, Vilnius University, Vilnius, Lithuania.
I SongailienėInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.ORCID http://orcid.org/0000-0003-2188-0556
P PauschLSC-EMBL Partnership Institute for Genome Editing Technologies, Life Sciences Center, Vilnius University, Vilnius, Lithuania. patrick.pausch@gmc.vu.lt.ORCID http://orcid.org/0000-0001-8947-9107

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Retrons are prokaryotic reverse transcriptase systems that produce multicopy single-stranded DNA (msDNA), yet the principles by which they mediate antiviral defense remain largely unresolved. Here we investigate the mechanism of Escherichia coli Eco2, a minimal retron composed of a single reverse transcriptase-nuclease fusion protein. Cryogenic electron microscopy and hydrogen/deuterium exchange mass spectrometry reveal the structures and dynamics of a trimeric nucleoprotein complex assembled within a branched msDNA scaffold, which cages the TOPRIM nucleases. We show that the phage-encoded endonuclease DenB initiates msDNA degradation, thereby unblocking the nuclease active sites. Activated Eco2 cuts transfer RNAs, resulting in translational shutdown for antiphage defense. We further identify ribosomal protein S1 as a putative RNA chaperone that associates with the msDNA precursor. These findings provide insights into the molecular mechanisms of minimal retrons and establish a structural basis for engineering of Eco2.

Indexed as

Escherichia coliEscherichia coli ProteinsRNA-Directed DNA PolymeraseBacteriophagesCryoelectron MicroscopyDNA, Single-StrandedModels, MolecularDNA, Single-StrandedEscherichia coli ProteinsRNA-Directed DNA Polymerase

Identifiers

PMID41709047
PMCPMC12916289

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.