Evidence map›Paper›PMID 41708620›Full record

ArticleNature communications2026

Extending the range of graph neural networks with global encodings.

Alessandro Caruso, Jacopo Venturin, Lorenzo Giambagli, Edoardo Rolando, Zakariya El-Machachi, Frank Noé, Cecilia Clementi

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. A unified machine-learning framework for ab initio multiscale modeling of liquids.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Alessandro Caruso *Department of Physics, Freie Universität Berlin, Arnimallee 12, Berlin, Germany.ORCID http://orcid.org/0000-0002-0907-0668
Jacopo Venturin *Department of Physics, Freie Universität Berlin, Arnimallee 12, Berlin, Germany.ORCID http://orcid.org/0009-0003-7347-3036
Lorenzo GiambagliDepartment of Physics, Freie Universität Berlin, Arnimallee 12, Berlin, Germany.ORCID http://orcid.org/0000-0002-0045-6839
Edoardo RolandoDepartment of Physics, Freie Universität Berlin, Arnimallee 12, Berlin, Germany.ORCID http://orcid.org/0009-0001-8276-1406
Zakariya El-MachachiDepartment of Physics, Freie Universität Berlin, Arnimallee 12, Berlin, Germany.
Frank NoéDepartment of Physics, Freie Universität Berlin, Arnimallee 12, Berlin, Germany. frank.noe@fu-berlin.de.ORCID http://orcid.org/0000-0003-4169-9324
Cecilia ClementiDepartment of Physics, Freie Universität Berlin, Arnimallee 12, Berlin, Germany. cecilia.clementi@fu-berlin.de.ORCID http://orcid.org/0000-0001-9221-2358

Funding

Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) project FAIME 01IS24076Deutsche Forschungsgemeinschaft (German Research Foundation) SFB/TRR 186, project A12; SFB 1114, projects B03, B08, and A04Einstein Stiftung Berlin (Einstein Foundation Berlin) project 0420815101National Science Foundation (NSF) PHY-2019745
6 · The paper itself

Abstract

Graph Neural Networks (GNNs) are routinely used in molecular physics, social sciences, and economics to model many-body interactions in graph-like systems. However, GNNs are inherently local and can suffer from information flow bottlenecks. This is particularly problematic when modeling large molecular systems, where dispersion forces and local electric field variations drive collective structural changes. We introduce RANGE, a model-agnostic framework that employs an attention-based aggregation-broadcast mechanism that significantly reduces oversquashing effects, and achieves remarkable accuracy in capturing long-range interactions with linear scaling. Notably, RANGE integrates attention with positional encodings and regularization to dynamically expand virtual representations in virtual-node message-passing implementations. Across multiple state-of-the-art baselines, RANGE consistently restores long-range information, enabling the models to correctly predict electrostatic and dispersion-driven behavior even in out-of-distribution extrapolation tasks, where other unmodified baselines fail. Compared with other long-range paradigms, RANGE achieves the highest accuracy while requiring significantly less computational overhead, and it enables stable and scalable molecular dynamic simulations. RANGE offers accurate and efficient modeling of long-range interactions for simulating large molecular systems.

Identifiers

PMID41708620
PMCPMC12920779

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.