Evidence map›Paper›PMID 41706888›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2026

Oncogenic function and transcriptional dynamics of MYCN in liver tumorigenesis.

Xian-Yang Qin, Yali Xu, Hricha Mishra, Yohei Shirakami, Shiou-Hwei Yeh, Chiao-Ling Li, Kazushi Numata, Yusuke Suenaga, Feifei Wei, Reiko Ando and 16 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Xian-Yang QinLaboratory for Cellular Function Conversion Technology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan.ORCID 0000-0002-0110-6849
Yali XuLaboratory for Cellular Function Conversion Technology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan.
Hricha MishraLaboratory for Cellular Function Conversion Technology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan.
Yohei ShirakamiDepartment of Gastroenterology, Graduate School of Medicine, Gifu University, Gifu 501-1194, Japan.ORCID 0000-0002-2471-090X
Shiou-Hwei YehDepartment of Microbiology, National Taiwan University College of Medicine, Taipei 100, Taiwan.
Chiao-Ling LiDepartment of Microbiology, National Taiwan University College of Medicine, Taipei 100, Taiwan.ORCID 0000-0002-5404-5672
Kazushi NumataGastroenterological Center, Yokohama City University Medical Center, Yokohama, Kanagawa 232-0024, Japan.ORCID 0000-0003-4671-4431
Yusuke SuenagaLaboratory of Evolutionary Oncology, Chiba Cancer Center Research Institute, Chiba 260-8717, Japan.
Feifei WeiDivision of Cancer Immunotherapy, Kanagawa Cancer Center Research Institute, Yokohama, Kanagawa 241-8515, Japan.ORCID 0000-0002-5770-3255
Reiko AndoSupport Unit for Bio-Material Analysis, Research Resources Division, RIKEN Center for Brain Science, Wako, Saitama 351-0198, Japan.ORCID 0000-0002-1143-5400
Hajime NishimuraLaboratory for Cellular Function Conversion Technology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan.
Erina FuruhataLaboratory for Cellular Function Conversion Technology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan.ORCID 0009-0008-3811-1263
Shiori MaedaLaboratory for Cellular Function Conversion Technology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan.
Yutaka FurutaniDepartment of Laboratory Medicine, The Jikei University School of Medicine, Tokyo 105-8461, Japan.ORCID 0000-0002-2945-0166
Kaori YanakaDepartment of Laboratory Medicine, The Jikei University School of Medicine, Tokyo 105-8461, Japan.
Masahiro YamamotoDepartment of Tumor Pathology, Graduate School of Health Sciences, Kumamoto University, Kumamoto 862-0976, Japan.ORCID 0000-0002-0652-6105
Masanori GotoDivision of Tumor Pathology, Department of Pathology, Asahikawa Medical University, Asahikawa, Hokkaido 078-8510, Japan.ORCID 0000-0003-1760-5252
Akira TakasawaDivision of Tumor Pathology, Department of Pathology, Asahikawa Medical University, Asahikawa, Hokkaido 078-8510, Japan.
Yuji NishikawaDivision of Tumor Pathology, Department of Pathology, Asahikawa Medical University, Asahikawa, Hokkaido 078-8510, Japan.
Hiroyuki TomitaDepartment of Tumor Pathology, Gifu University Graduate School of Medicine, Gifu 501-1194, Japan.ORCID 0000-0002-3291-0274
Luc GailhousteLaboratory for Brain Development and Disorders, RIKEN Center for Brain Science, Wako, Saitama 351-0198, Japan.ORCID 0000-0002-4489-0522
Tomokazu MatsuuraDepartment of Laboratory Medicine, The Jikei University School of Medicine, Tokyo 105-8461, Japan.
Pei-Jer ChenGraduate Institute of Clinical Medicine, Department of Internal Medicine, National Taiwan University College of Medicine and Hospital, Taipei 100, Taiwan.
Masahito ShimizuDepartment of Gastroenterology, Graduate School of Medicine, Gifu University, Gifu 501-1194, Japan.ORCID 0000-0002-1151-2058
Yoshitaka HippoLaboratory of Evolutionary Oncology, Chiba Cancer Center Research Institute, Chiba 260-8717, Japan.ORCID 0000-0002-4975-1812
Harukazu SuzukiLaboratory for Cellular Function Conversion Technology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan.ORCID 0000-0002-8087-0836

Funding

Japan Agency for Medical Research and Development (AMED) JP23fk0210100h0003Japan Agency for Medical Research and Development (AMED) JP24jm0210092s0104MEXT | Japan Science and Technology Agency (JST) JPMJNX25E3MEXT | JSPS | Japan Society for the Promotion of Science London (JSPS) JP24K10088
6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC) is a leading cause of cancer-related mortality. It is often diagnosed at advanced stages and characterized by high recurrence rates. Although chronic liver inflammation and metabolic dysfunction are established contributors to tumorigenesis, the molecular mechanisms that link microenvironmental stress to malignant transformation remain poorly understood. MYCN, a proto-oncogenic transcription factor, has emerged as a potential biomarker of cancer stemness. However, its role in hepatocarcinogenesis remains unclear. In this study, we elucidated the oncogenic role of MYCN and its dynamic transcriptional regulation during liver tumorigenesis. Using a hydrodynamic tail vein injection-based transposon system in mice, we demonstrated that MYCN overexpression synergizes with AKT activation to promote liver tumorigenesis. Transcriptomic profiling revealed that MYCN-driven tumors exhibited features of human HCC subtypes enriched in stress-adaptive transcriptional programs. Time-resolved spatial transcriptomics further uncovered a MYCN-enriched niche characterized by epithelial-mesenchymal transition (EMT) and Wnt/β-catenin signaling, which expanded during tumor progression and was spatially proximate to transformed malignant cells. To translate these findings to human HCC, we developed a machine learning-based MYCN niche score and validated its clinical relevance across multiple human HCC cohorts. This score reliably predicted recurrence risk and identified EMT-prone microenvironments, with stronger predictive performance in nontumor tissues, suggesting its potential in detecting precancerous niches predisposed to de novo tumorigenesis. Collectively, our findings establish MYCN as a functional driver and spatial marker of tumor-promoting microenvironments in liver tumorigenesis; additionally, we propose a clinically actionable strategy to identify high-risk patients through transcriptomic profiling of nontumor liver tissue.

Indexed as

CarcinogenesisCarcinoma, HepatocellularLiver NeoplasmsN-Myc Proto-Oncogene ProteinAnimalsCell Transformation, NeoplasticEpithelial-Mesenchymal TransitionGene Expression Regulation, NeoplasticHumansLiverMiceTranscription, GeneticWnt Signaling PathwayMYCN protein, humanMYCN protein, mouseN-Myc Proto-Oncogene Proteinliver cancerMYCNoncogenespatial transcriptometumor microenvironment

Identifiers

PMID41706888
PMCPMC12933037

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.