Evidence map›Paper›PMID 41698909›Full record

ArticleNature communications2026

Mithramycin alters EWS::FLI1 DNA binding and RNA polymerase II processivity to inhibit nascent transcription.

Rebecca Kaufman, Guillermo Flores, Elissa A Boguslawski, Seneca Kinn-Gurzo, Maggie Chassé, Ian Beddows, Marie Adams, Matthew C Stout, Lauren Gaetano, Raphael Lopez and 6 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Rebecca Kaufman *Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0001-8535-9730
Guillermo Flores *Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Elissa A Boguslawski *Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-4233-903X
Seneca Kinn-GurzoChildren's Hospital of Philadelphia, Philadelphia, PA, USA.
Maggie ChasséChildren's Hospital of Philadelphia, Philadelphia, PA, USA.
Ian BeddowsVan Andel Research Institute, Grand Rapids, MI, USA.ORCID http://orcid.org/0000-0001-7403-0016
Marie AdamsVan Andel Research Institute, Grand Rapids, MI, USA.ORCID http://orcid.org/0000-0001-7909-2339
Matthew C StoutChildren's Hospital of Philadelphia, Philadelphia, PA, USA.
Lauren GaetanoChildren's Hospital of Philadelphia, Philadelphia, PA, USA.
Raphael LopezChildren's Hospital of Philadelphia, Philadelphia, PA, USA.
Sridhar VeluvoluChildren's Hospital of Philadelphia, Philadelphia, PA, USA.
Andrew FullerUniversity of Michigan Division of Pediatric Hematology/Oncology, Ann Arbor, MI, USA.ORCID http://orcid.org/0009-0006-5803-3595
Susan M Kitchen-GoosenVan Andel Research Institute, Grand Rapids, MI, USA.
Zachary P TolstykaUniversity of Michigan Division of Pediatric Hematology/Oncology, Ann Arbor, MI, USA.
Jenna M GedminasChildren's Hospital of Philadelphia, Philadelphia, PA, USA.
Patrick J GroharChildren's Hospital of Philadelphia, Philadelphia, PA, USA. grohar@med.umich.edu.ORCID http://orcid.org/0000-0002-1071-4563

Funding

Training Program in Molecular HematologyT32HL007622 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SUNG WON CHOI, Jordan A. Shavit · 1986 to 2026
$9.2M
Development of Mithramycin Analogues to Target Transcriptional Vulnerabilities in Rhabdoid TumorF31CA236300 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI CHASSE, MAGGIE · 2019 to 2020
$81k
Characterizing Chromatin Remodeling Mechanisms of Chemo-Sensitivity and Resistance in Pediatric Solid TumorsF99CA253749 · NCI · VAN ANDEL INSTITUTE GRADUATE SCHOOL · PI CHASSE, MAGGIE · 2020 to 2020
$46k
NHLBI NIH HHS T32 HL007622U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) F31CA236300U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) F99CA253749
6 · The paper itself

Abstract

Although many DNA binding natural products exert their effects through non-specific mechanisms, a therapeutic opportunity exists for a subset of these compounds that alter the expression or activity of specific driver oncogenes in specific cell contexts. In this study, we integrate CUT&Tag with Global Run-On Sequencing (CUT, Tag, and GRO) to show that the minor groove binding compound, mithramycin (MMA), inhibits the Ewing sarcoma oncogenic driver, the EWS::FLI1 transcription factor. MMA causes either an increase or decrease in EWS::FLI1 binding to chromatin at downstream target response elements to poison nascent transcription. The reversal of EWS::FLI1 activity is limited by non-specific effects of the drug on RNAPII processivity but can be optimized by continuous administration at low concentration to cause more precise reversal of the oncogenic transcriptome and striking Ewing sarcoma xenograft regressions. The activity in vivo is further improved with a less-toxic second-generation analog, AIT-102.

Indexed as

Antibiotics, AntineoplasticOncogene Proteins, FusionPlicamycinProto-Oncogene Protein c-fli-1RNA-Binding Protein EWSRNA Polymerase IISarcoma, EwingTranscription, GeneticAnimalsCell Line, TumorChromatinDNAGene Expression Regulation, NeoplasticHumansMiceProtein BindingAntibiotics, AntineoplasticChromatinDNAEWS-FLI fusion proteinOncogene Proteins, FusionPlicamycinProto-Oncogene Protein c-fli-1RNA-Binding Protein EWSRNA Polymerase II

Identifiers

PMID41698909
PMCPMC13021929

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.