ArticleBioinformatics (Oxford, England)2026
CCC-GPU: a graphics processing unit (GPU)-accelerated nonlinear correlation coefficient for large-scale transcriptomic analyses.
Article in Bioinformatics (Oxford, England), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
motivationIdentifying meaningful patterns in complex biological data necessitates correlation coefficients capable of capturing diverse relationship types beyond simple linearity. Furthermore, efficient computational tools are crucial for handling the ever-increasing scale of biological datasets.
resultsWe introduce CCC-GPU, a high-performance, GPU-accelerated implementation of the Clustermatch Correlation Coefficient (CCC). CCC-GPU computes correlation coefficients for mixed data types, effectively detects nonlinear relationships, and offers significant speed improvements over its predecessor. AVAILABILITY AND IMPLEMENTATION: The source code of CCC-GPU is openly available on GitHub (https://github.com/pivlab/ccc-gpu) and archived on Zenodo (https://doi.org/10.5281/zenodo.18310318), distributed under the BSD-2-Clause Plus Patent License.
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