Evidence map›Paper›PMID 41688617›Full record

ArticleScientific reports2026

Quantitative fat-fraction analysis of the rotator cuff muscles on clinical sagittal and coronal T1-weighted MRI using deep learning algorithms.

Hanspeter Hess, Alexandra Oswald, Keivan Daneshvar, Nicolas Gerber, Michael Schär, Matthias A Zumstein, Kate Gerber

Abstract read
In one paragraph

Article in Scientific reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hanspeter HessDepartment of Orthopaedic Surgery and Traumatology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0003-0072-3447
Alexandra OswaldDepartment of Orthopaedic Surgery and Traumatology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0009-0005-0161-2222
Keivan DaneshvarDepartment of Diagnostic, Interventional and Paediatric Radiology (DIPR), Bern University Hospital, Inselspital, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0002-0345-0379
Nicolas GerberDepartment of Orthopaedic Surgery and Traumatology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0003-0308-699X
Michael SchärDepartment of Orthopaedic Surgery and Traumatology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0003-1220-8266
Matthias A ZumsteinShoulder, Elbow & Orthopaedic Sports Medicine, Orthopaedics Sonnenhof, Bern, Switzerland.ORCID http://orcid.org/0000-0001-5480-6008
Kate GerberDepartment of Orthopaedic Surgery and Traumatology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland. kate.gerber@unibe.ch.ORCID http://orcid.org/0000-0003-4086-4973

Funding

Innosuisse - Schweizerische Agentur für Innovationsförderung 35656.1 IP-LS
6 · The paper itself

Abstract

Increased fatty infiltration of the rotator cuff muscles is a primary prognostic factor for poor surgical outcomes of rotator cuff repair surgery. Preoperative fat assessment currently relies on the qualitative Goutallier classification using magnetic resonance imaging (MRI). This method suffers from high observer variability and only assesses a single slice. The aim of this study was to use deep learning to predict quantitative, voxel-wise fat fraction (FF) from standard T1-weighted MRIs. A deep learning-based algorithm was developed for automatic FF prediction using a voxel-wise, five-class system. The network was trained on 75 patients using paired T1-weighted and 2-point Dixon MRI, with rotator cuff muscles segmented in coronal and sagittal planes. It was validated on 24 patients. The proposed algorithm was significantly more accurate than a binary fat classification approach (p < 0.001). Average whole muscle FF calculation errors (mean ± standard deviation) ranged from - 0.5 ± 2.2% to 2.3 ± 3.9% compared to Dixon MRI measures. Deep learning enabled an accurate, voxel-wise FF quantification using clinical T1-weighted MRIs. This method allows for muscle FF distribution analysis, providing a more comprehensive assessment, that can improve prognosis analysis and optimise treatment planning.

Indexed as

Adipose TissueDeep LearningMagnetic Resonance ImagingRotator CuffAgedAlgorithmsFemaleHumansMaleMiddle Aged

Identifiers

PMID41688617
PMCPMC12982604

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.