Evidence map›Paper›PMID 41688466›Full record

ArticleNature communications2026

Allelic variation of Avr genes in highly virulent strains explains severe wheat stem rust epidemics.

Rebecca E Spanner, Eva C Henningsen, Camilla Langlands-Perry, Jian Chen, Jibril Lubega, Oadi Matny, David Lewis, Li Chen Cheah, Zhouyang Su, Alexis Feist and 14 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Rebecca E Spanner *Department of Plant Pathology, University of Minnesota (UMN), St. Paul, MN, USA.ORCID http://orcid.org/0000-0002-4735-9649
Eva C Henningsen *Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia.
Camilla Langlands-Perry *Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia.ORCID http://orcid.org/0000-0003-2635-6905
Jian ChenCommonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia.ORCID http://orcid.org/0000-0001-8670-6984
Jibril LubegaNiab, Park Farm, Villa Rd, Impington, Histon, Cambridge, UK.
Oadi MatnyDepartment of Plant Pathology, University of Minnesota (UMN), St. Paul, MN, USA.ORCID http://orcid.org/0000-0002-8447-2886
David LewisCommonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia.
Li Chen CheahCommonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia.
Zhouyang SuCommonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia.
Alexis FeistDepartment of Plant Pathology, University of Minnesota (UMN), St. Paul, MN, USA.
Eric S NazarenoDepartment of Plant Pathology, University of Minnesota (UMN), St. Paul, MN, USA.ORCID http://orcid.org/0000-0001-5192-2644
Feng LiDepartment of Plant Pathology, University of Minnesota (UMN), St. Paul, MN, USA.ORCID http://orcid.org/0000-0001-8528-4249
Megan A OutramCommonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia.ORCID http://orcid.org/0000-0003-4510-3575
Taj ArndellCommonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia.ORCID http://orcid.org/0000-0002-6540-2006
Thomas VanherckeCommonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia.
Nino VirzìCouncil for Agricultural Research and Economics (CREA), Research Centre for Cereal and Industrial Crops, Acireale, CT, Italy.
Ming LuoCommonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia.ORCID http://orcid.org/0000-0002-8816-3183
Michael AyliffeCommonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia.
Eric StoneResearch School of Biology, The Australian National University (ANU), Canberra, ACT, Australia.ORCID http://orcid.org/0000-0002-2725-4209
Kostya KanyukaNiab, Park Farm, Villa Rd, Impington, Histon, Cambridge, UK.ORCID http://orcid.org/0000-0001-6324-4123
Jana SperschneiderCommonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia.ORCID http://orcid.org/0000-0002-9385-8588
Peter N DoddsCommonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia. peter.dodds@csiro.au.ORCID http://orcid.org/0000-0003-0620-5923
Brian J SteffensonDepartment of Plant Pathology, University of Minnesota (UMN), St. Paul, MN, USA. bsteffen@umn.edu.ORCID http://orcid.org/0000-0001-7961-5363
Melania FigueroaCommonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia. melania.figueroa@csiro.au.ORCID http://orcid.org/0000-0003-2636-661X

Funding

Grains Research and Development Corporation (Grains Research & Development Corporation) CSP2403-014RTXRCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/W018403/1United States Department of Agriculture | National Institute of Food and Agriculture (NIFA) 2022-67013-36505
6 · The paper itself

Abstract

Wheat stem rust is a disease of global importance caused by the fungal pathogen Puccinia graminis f. sp. tritici (Pgt). Here we generate chromosome-level, nuclear-phased genome references for Pgt isolates ETH2013-1 and ITA2018-1, representing races TKTTF and TTRTF respectively, that have caused major epidemics in Africa and Europe. The nuclear haplotypes of ETH2013-1 and ITA2018-1 are unique and unrelated to those of Ug99 and Pgt21. Pgt nuclear haplotypes show extensive variation in sequence and copy number of six known Avr genes and AvrSr33, which we identify through an effector gene library screen. Recognition properties of 22 novel Avr gene variants explain the race virulence phenotypes and the outbreak of TTRTF on durum cultivars containing Sr13b, since ITA2018-1 carries a homozygous deletion of AvrSr13. This work establishes an Avr gene atlas for Pgt that can inform wheat breeding and enable development of sequence-based virulence diagnostic tools for pathogen surveillance.

Indexed as

BasidiomycotaGenes, FungalPlant DiseasesPucciniaTriticumAllelesGenetic VariationHaplotypesVirulence

Identifiers

PMID41688466
PMCPMC13013614

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.