Evidence map›Paper›PMID 41688119›Full record

ArticleBMJ open2026

Cohort profile: Infant Gut Bacterial Study in Nigeria (INBUGS-NG).

Chinenye Pascaline Akpulu, Hafsat Maikudi Sada, Hafsat Ahmed, Hassana B Idris, Rashida Yakubu, Aliyu Aminu, Kenneth Iregbu, Jared Oduwo, Edward Owinoh, Aditya K Lankapalli and 6 more

Abstract read
In one paragraph

Article in BMJ open, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Chinenye Pascaline AkpuluUniversity of Oxford, Oxford, UK chinenye.akpulu@linacre.ox.ac.uk.ORCID http://orcid.org/0009-0008-6869-1895
Hafsat Maikudi SadaMicrobiology, Murtala Muhammed Specialist Hospital, Kano, Nigeria.
Hafsat AhmedMicrobiology, Murtala Muhammed Specialist Hospital, Kano, Nigeria.
Hassana B IdrisMicrobiology, Murtala Muhammed Specialist Hospital, Kano, Nigeria.
Rashida YakubuMicrobiology, Murtala Muhammed Specialist Hospital, Kano, Nigeria.
Aliyu AminuMicrobiology, Aminu Kano Teaching Hospital, Kano, Nigeria.
Kenneth IregbuMicrobiology, National Hospital Abuja, Abuja, Nigeria.
Jared OduwoBiology, University of Oxford, Oxford, UK.
Edward OwinohUniversity of Oxford, Oxford, UK.
Aditya K LankapalliUniversity of Oxford, Oxford, UK.
Laura De NiesSir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Chioma R AchiBiology, University of Oxford, Oxford, UK.
Kathryn ThomsonBiology, University of Oxford, Oxford, UK.
Mathew StracySir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Timothy R WalshBiology, University of Oxford, Oxford, UK.
Kirsty SandsBiology, University of Oxford, Oxford, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeThe Infant Gut Bacterial Study in Nigeria (INBUGS-NG) investigates how delivery mode, antibiotic exposure, feeding practices and environmental factors shape gut microbiome development and acquisition of antibiotic resistance genes (ARGs) during the first year of life in northern Nigeria.

participantsBetween February and July 2024, 90 mother-infant dyads were enrolled at a tertiary hospital in Kano city, Nigeria. This was a prospective longitudinal cohort with follow-ups at 10 scheduled time points: days 0, 1, 3, 5, 7, 14, 28, 90, 180 and 365. We also intensified stool sampling after infant antibiotic administration, enabling dense early-life sampling. To date, the cohort has contributed 480 infant stool samples, 232 maternal rectal swabs, 254 breast milk samples and 806 environmental samples (total 1772). In parallel, socio-demographic, clinical and cultural data were collected using Research Electronic Data Capture (REDCap) and household visit diaries. FINDINGS TO DATE: Baseline data show that 84/90 mothers (93.3%) received postpartum antibiotics, and 26/90 infants (28.9%) received antibiotics within the first 3 months of life. Only 8% of infants were exclusively breastfed, with early water supplementation common. Caesarean deliveries accounted for 25% of births, and the mean gestational age was 38.5 weeks. Across the cohort, high retention was achieved, and the study has generated a unique long-read metagenomic resource from an African infant population, with analyses ongoing. FUTURE PLANS: Shotgun long-read metagenomic sequencing (Oxford Nanopore) will enable strain-level and plasmid-level profiling of microbial communities and ARGs. Planned analyses include associations between early-life exposures and resistome dynamics, as well as cross-cohort comparisons with a parallel study in Pakistan. Follow-up will continue through 12 months.

Indexed as

Anti-Bacterial AgentsGastrointestinal MicrobiomeAdultBreast FeedingDelivery, ObstetricFecesFemaleHumansInfantInfant, NewbornLongitudinal StudiesMaleMilk, HumanNigeriaProspective StudiesAnti-Bacterial AgentsLongitudinal studiesMicrobiologyMicrobiotaNEONATOLOGYObservational Study

Identifiers

PMID41688119
PMCPMC12911800

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.