Evidence map›Paper›PMID 41687261›Full record

ArticlePoultry science2026

Insights into speckled eggs provided by single-cell transcriptomics in high-yield laying hens.

Yan Sun, Jing Zhang, Zhongsheng Chen, Wei Liu, Haixia Han, Dan Hao, Dapeng Li, Jie Wang, Jie Liu, Qiuxia Lei and 6 more

Abstract read
In one paragraph

Article in Poultry science, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Yan SunPoultry Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China; Shandong Provincial Key Laboratory of Livestock and Poultry Breeding (PKL2024B15), Jinan, 250023, Shandong, China; Jinan Key Laboratory of Poultry Germplasm Resources Innovation and Healthy Breeding, Jinan, 250100, China.
Jing ZhangPoultry Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China; Shandong Provincial Key Laboratory of Livestock and Poultry Breeding (PKL2024B15), Jinan, 250023, Shandong, China; Shandong Blue Horizon Ecological Agriculture Co., Ltd, 257094, Dongying, China; Jinan Key Laboratory of Poultry Germplasm Resources Innovation and Healthy Breeding, Jinan, 250100, China; College of Veterinary Medicine, Qingdao Agricultural University, Qingdao, 266109, China.
Zhongsheng ChenPoultry Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China; Shandong Provincial Key Laboratory of Livestock and Poultry Breeding (PKL2024B15), Jinan, 250023, Shandong, China; Jinan Key Laboratory of Poultry Germplasm Resources Innovation and Healthy Breeding, Jinan, 250100, China.
Wei LiuPoultry Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China; Shandong Provincial Key Laboratory of Livestock and Poultry Breeding (PKL2024B15), Jinan, 250023, Shandong, China; Jinan Key Laboratory of Poultry Germplasm Resources Innovation and Healthy Breeding, Jinan, 250100, China.
Haixia HanPoultry Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China; Shandong Provincial Key Laboratory of Livestock and Poultry Breeding (PKL2024B15), Jinan, 250023, Shandong, China; Jinan Key Laboratory of Poultry Germplasm Resources Innovation and Healthy Breeding, Jinan, 250100, China.
Dan HaoPoultry Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China; Shandong Provincial Key Laboratory of Livestock and Poultry Breeding (PKL2024B15), Jinan, 250023, Shandong, China; Jinan Key Laboratory of Poultry Germplasm Resources Innovation and Healthy Breeding, Jinan, 250100, China.
Dapeng LiPoultry Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China; Shandong Provincial Key Laboratory of Livestock and Poultry Breeding (PKL2024B15), Jinan, 250023, Shandong, China; Jinan Key Laboratory of Poultry Germplasm Resources Innovation and Healthy Breeding, Jinan, 250100, China.
Jie WangPoultry Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China; Shandong Provincial Key Laboratory of Livestock and Poultry Breeding (PKL2024B15), Jinan, 250023, Shandong, China; Jinan Key Laboratory of Poultry Germplasm Resources Innovation and Healthy Breeding, Jinan, 250100, China.
Jie LiuPoultry Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China; Shandong Provincial Key Laboratory of Livestock and Poultry Breeding (PKL2024B15), Jinan, 250023, Shandong, China; Jinan Key Laboratory of Poultry Germplasm Resources Innovation and Healthy Breeding, Jinan, 250100, China.
Qiuxia LeiPoultry Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China; Shandong Provincial Key Laboratory of Livestock and Poultry Breeding (PKL2024B15), Jinan, 250023, Shandong, China; Jinan Key Laboratory of Poultry Germplasm Resources Innovation and Healthy Breeding, Jinan, 250100, China.
Yan ZhouPoultry Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China; Shandong Provincial Key Laboratory of Livestock and Poultry Breeding (PKL2024B15), Jinan, 250023, Shandong, China; Jinan Key Laboratory of Poultry Germplasm Resources Innovation and Healthy Breeding, Jinan, 250100, China.
Dingguo CaoPoultry Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China; Shandong Provincial Key Laboratory of Livestock and Poultry Breeding (PKL2024B15), Jinan, 250023, Shandong, China; Jinan Key Laboratory of Poultry Germplasm Resources Innovation and Healthy Breeding, Jinan, 250100, China.
YunChao WangShandong Blue Horizon Ecological Agriculture Co., Ltd, 257094, Dongying, China.
Guiming LiPoultry Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China; Shandong Provincial Key Laboratory of Livestock and Poultry Breeding (PKL2024B15), Jinan, 250023, Shandong, China; Shandong Blue Horizon Ecological Agriculture Co., Ltd, 257094, Dongying, China; Jinan Key Laboratory of Poultry Germplasm Resources Innovation and Healthy Breeding, Jinan, 250100, China.
Fu ChenCollege of Veterinary Medicine, Qingdao Agricultural University, Qingdao, 266109, China.
Fuwei LiPoultry Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China; Shandong Provincial Key Laboratory of Livestock and Poultry Breeding (PKL2024B15), Jinan, 250023, Shandong, China; Shandong Blue Horizon Ecological Agriculture Co., Ltd, 257094, Dongying, China; Jinan Key Laboratory of Poultry Germplasm Resources Innovation and Healthy Breeding, Jinan, 250100, China. Electronic address: lifuwei1224@163.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Eggshell quality is a major concern in the poultry industry. The speckle phenotype in eggshell affects eggshell color, thickness, and Haugh Unit (HU) and significantly affects the hatchability rate. The rate of speckled eggs increases during the late-laying period, which can lead to notable economic losses. Eggshell speckles have medium heritability; however, the genetic architecture of speckled eggshells remains unclear. In this study, the chickens were divided into two groups based on the rate of egg speckling. Uterine tissues were collected and analyzed using 10X Genomics single-cell RNA sequencing to delineate the molecular signatures of the various cell types. A total of 10 cell types were identified: immune (B, T, monocyte macrophages, and plasma cells), endothelial, epithelial, stromal, neuroendocrine, serous, and protoporphyrin IX pigment cells. The trends of cell type distributions were consistent in two groups. Functional enrichment analysis showed that unique biological processes, such as IgA production and Toll-like C-type lectin receptor signaling pathways, were enriched in immune cells, whereas TGF-beta, Wnt, and NOD-like receptor signaling pathways were enriched in epithelial cells. Subsequently, we identified differentially expressed genes in the two groups, among which SPP1 (secreted phosphoprotein 1) was down-regulated in all cell types in the speckled group. The cellular interaction signals of speckled group were significantly enhanced compared to the control group. The cell proliferation and differentiation pathways mediated by WNT, SPP1, and BMP were inhibited and the interaction related to cell migration was activated in the speckled group. This study explored cell heterogeneity, extended prior findings by adding single-cell resolution atlas, and identified cell type specific patterns that can guide future functional studies of speckled eggs.

Indexed as

ChickensEgg ShellOvumTranscriptomeAnimalsFemaleSingle-Cell AnalysisSingle-Cell Gene Expression AnalysisChickenEggshell qualityscRNA-seqSpeckled eggsUterus

Identifiers

PMID41687261
PMCPMC12925201

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.