Evidence map›Paper›PMID 41686823›Full record

ArticlePloS one2026

Use as directed? A comparison of software tools intended to check rigor and transparency of published work.

Peter Eckmann, Adrian Barnett, Alexandra Bannach-Brown, Elisa Pilar Bascunan Atria, Guillaume Cabanac, Louise Delwen Owen Franzen, Małgorzata Anna Gazda, Kaitlyn Hair, James Howison, Halil Kilicoglu and 10 more

Abstract readComparative Study
In one paragraph

Article in PloS one, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Peter EckmannDepartment of Computer Science and Engineering, UC San Diego, La Jolla, California, United States of America.ORCID https://orcid.org/0000-0002-5388-9451
Adrian BarnettSchool of Public Health and Social Work, Queensland University of Technology, Kelvin Grove, Queensland, Australia.
Alexandra Bannach-BrownQUEST Center for Responsible Research, Berlin Institute of Health at Charité Universitätsmedizin Berlin, Berlin, Germany.ORCID https://orcid.org/0000-0002-3161-1395
Elisa Pilar Bascunan AtriaQUEST Center for Responsible Research, Berlin Institute of Health at Charité Universitätsmedizin Berlin, Berlin, Germany.
Guillaume CabanacUniversité de Toulouse & Institut Universitaire de France, Toulouse, France.
Louise Delwen Owen FranzenQUEST Center for Responsible Research, Berlin Institute of Health at Charité Universitätsmedizin Berlin, Berlin, Germany.
Małgorzata Anna GazdaDepartment of Biological Sciences, University of Montréal, Montréal, Québec, Canada.ORCID https://orcid.org/0000-0001-8369-1350
Kaitlyn HairUCL Social Research Institute, University College London, London, United Kingdom.ORCID https://orcid.org/0000-0003-0180-7343
James HowisonInformation School of the University of Texas at Austin, Austin, Texas, United States of America.ORCID https://orcid.org/0000-0002-5702-149X
Halil KilicogluSchool of Information Sciences, University of Illinois Urbana-Champaign, Illinois, United States of America.
Cyril LabbeUniversité Grenoble Alpes, Saint-Martin-d'Hères, France.
Sarah McCannQUEST Center for Responsible Research, Berlin Institute of Health at Charité Universitätsmedizin Berlin, Berlin, Germany.
Vladislav NachevQUEST Center for Responsible Research, Berlin Institute of Health at Charité Universitätsmedizin Berlin, Berlin, Germany.
Martijn Roelandsemartijnroelandse.dev, Ouderkerk aan de Amstel, Netherlands.
Maia Salholz-HillelQUEST Center for Responsible Research, Berlin Institute of Health at Charité Universitätsmedizin Berlin, Berlin, Germany.
Robert SchulzQUEST Center for Responsible Research, Berlin Institute of Health at Charité Universitätsmedizin Berlin, Berlin, Germany.ORCID https://orcid.org/0000-0002-4830-309X
Gerben Ter RietHogeschool van Amsterdam, Amsterdam University of Applied Sciences, Amsterdam, Netherlands.ORCID https://orcid.org/0000-0002-2231-7637
Colby VorlandIndiana University School of Public Health, Bloomington, Indiana, United States of America.
Anita BandrowskiDepartment of Neuroscience, UC San Diego, La Jolla, California, United States of America.
Tracey WeissgerberQUEST Center for Responsible Research, Berlin Institute of Health at Charité Universitätsmedizin Berlin, Berlin, Germany.ORCID https://orcid.org/0000-0002-7490-2600

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The causes of the reproducibility crisis include lack of standardization and transparency in scientific reporting. Checklists such as ARRIVE and CONSORT seek to improve transparency, but they are not always followed by authors and peer review often fails to identify missing items. To address these issues, there are several automated tools that have been designed to check different rigor criteria. We have conducted a broad comparison of 11 automated tools across 9 different rigor criteria from the ScreenIT group. We found some criteria, including detecting open data, where the combination of tools showed a clear winner, a tool which performed much better than other tools. In other cases, including detection of inclusion and exclusion criteria, the combination of tools exceeded the performance of any one tool. We also identified key areas where tool developers should focus their effort to make their tool maximally useful. We conclude with a set of insights and recommendations for stakeholders in the development of rigor and transparency detection tools. The code and data for the study is available at https://github.com/PeterEckmann1/tool-comparison.

Indexed as

PublishingSoftwareReproducibility of Results

Identifiers

PMID41686823
PMCPMC12904390

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.