Evidence map›Paper›PMID 41685867›Full record

ArticleJournal of experimental botany2026

A pennycress transparent testa 8 knockout mutant has drastic changes in seed coat anatomy and chemical compositions.

Xinxin Ding, Summer Duckworth, Madeline Southworth, Andrew Lipton, Chaevien S Clendinen, Barsanti Gautam, Maliheh Esfahanian, Dusan Velickovic, John C Sedbrook, Pubudu Handakumbura

Abstract read
In one paragraph

Article in Journal of experimental botany, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Seed biology: the birth of plant life.Journal of experimental botany · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Xinxin DingEnvironmental Molecular Sciences Laboratory (EMSL), Pacific Northwest National Laboratory (PNNL), Richland, WA 99354, USA.ORCID 0000-0002-3448-9444
Summer DuckworthEnvironmental Molecular Sciences Laboratory (EMSL), Pacific Northwest National Laboratory (PNNL), Richland, WA 99354, USA.
Madeline SouthworthEnvironmental Molecular Sciences Laboratory (EMSL), Pacific Northwest National Laboratory (PNNL), Richland, WA 99354, USA.
Andrew LiptonEnvironmental Molecular Sciences Laboratory (EMSL), Pacific Northwest National Laboratory (PNNL), Richland, WA 99354, USA.ORCID 0000-0003-4937-4145
Chaevien S ClendinenEnvironmental Molecular Sciences Laboratory (EMSL), Pacific Northwest National Laboratory (PNNL), Richland, WA 99354, USA.ORCID 0000-0002-1487-4126
Barsanti GautamSchool of Biological Sciences, Illinois State University, Normal, IL, USA.ORCID 0009-0006-0949-8927
Maliheh EsfahanianSchool of Biological Sciences, Illinois State University, Normal, IL, USA.
Dusan VelickovicEnvironmental Molecular Sciences Laboratory (EMSL), Pacific Northwest National Laboratory (PNNL), Richland, WA 99354, USA.ORCID 0000-0001-7945-9620
John C SedbrookSchool of Biological Sciences, Illinois State University, Normal, IL, USA.ORCID 0000-0002-4930-1627
Pubudu HandakumburaEnvironmental Molecular Sciences Laboratory (EMSL), Pacific Northwest National Laboratory (PNNL), Richland, WA 99354, USA.ORCID 0000-0002-1708-8315

Funding

Battelle DE-AC05-76RL01830Genomic Science Program DE-SC0021286Office of Biological and Environmental ResearchOffice of SciencePacific Northwest National Laboratorythe U.S. Department of Energy, Office of Science, Office of Biological and Environmental ResearchU.S. Department of EnergyWilliam R. Wiley Environmental Molecular Sciences Laboratory (EMSL)
6 · The paper itself

Abstract

Pennycress is a winter annual intermediate crop with ∼30% seed oil content suitable for producing biofuels. Here, we evaluated seed development, anatomy, and agronomically relevant traits of a transparent testa 8 knockout mutant (tt8-2bp) generated by CRISPR genome editing to improve seed quality. We performed histochemical analyses on wild-type and tt8-2bp seeds at different developmental stages. No visible anatomical defects were observed in embryos and endosperm of tt8-2bp seeds. However, tt8-2bp seed coats had drastically reduced proanthocyanidins and proanthocyanidin monomers, which correlated with increased seed coat permeability, increased imbibition rates, and altered seed aging of tt8-2bp seeds. A cuticle layer was detected in tt8-2bp and wild-type seed coats. Further analysis is required to assess possible quantitative and structural defects in the tt8-2bp seed cuticle. Based on metabolomic and solid-state NMR analyses, tt8-2bp seed coats had decreased aromatic compounds and cell wall polysaccharides compared with wild-type seed coats. Consistently, tt8-2bp seeds also had reduced non-embryonic tissue dry weights, increased embryo dry weights, and unchanged total seed weights compared with wild-type seeds. This indicated altered nutrient partitioning during tt8-2bp seed development. The agronomic implications of tt8-2bp altered seed traits on pennycress domestication are discussed in depth.

Indexed as

Plant ProteinsSeedsGene Knockout TechniquesMutationPlant ProteinsCell wallmetabolomicspennycress (Thlaspi arvense L.)proanthocyanidinsseed agingseed anatomyseed coatseed coat permeabilityseed imbibition ratessolid-state NMR

Identifiers

PMID41685867
PMCPMC13022552

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.