Evidence map›Paper›PMID 41683583›Full record

ArticleInternational journal of molecular sciences2026

Modulation of Patient-Derived Tumor Organoids by SARS-CoV-2 Variants Across Cancer Types: A Study Combining Morphology, Inflammation, and Whole-Exome Profiling.

Danielle Ferreira, Tayanne Sassaro, Anael Viana Pinto Alberto, Marília de Melo, Audrien Alves Andrade, Beatriz Iandra Ferreira, Otacílio C Moreira, Daniel Moreira, Thiago Parente, Bruna Bordim and 9 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Danielle FerreiraLaboratory of Applied Genomics and Bioinovations, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro 21040-360, RJ, Brazil.ORCID 0009-0006-1325-0836
Tayanne SassaroLaboratory of Applied Genomics and Bioinovations, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro 21040-360, RJ, Brazil.
Anael Viana Pinto AlbertoLaboratory of Applied Genomics and Bioinovations, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro 21040-360, RJ, Brazil.
Marília de MeloNext Generation Sequencing Facility, Oswaldo Cruz Foundation, Rio de Janeiro 21040-360, RJ, Brazil.ORCID 0009-0005-3354-501X
Audrien Alves AndradeNext Generation Sequencing Facility, Oswaldo Cruz Foundation, Rio de Janeiro 21040-360, RJ, Brazil.
Beatriz Iandra FerreiraMolecular Virology and Parasitology Laboratory, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro 21040-360, RJ, Brazil.
Otacílio C MoreiraMolecular Virology and Parasitology Laboratory, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro 21040-360, RJ, Brazil.ORCID 0000-0002-5340-8697
Daniel MoreiraLaboratory of Applied Genomics and Bioinovations, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro 21040-360, RJ, Brazil.ORCID 0000-0002-9434-9582
Thiago ParenteLaboratory of Applied Genomics and Bioinovations, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro 21040-360, RJ, Brazil.ORCID 0000-0001-7501-726X
Bruna BordimInvitrocue Brasil, São Paulo 04513-020, SP, Brazil.ORCID 0009-0005-9406-2409
Júlia de AbreuInvitrocue Brasil, São Paulo 04513-020, SP, Brazil.
Fabiana RondãoIntegrated Center for Translational Oncology Research (CIPOT), Center for Technological Development in Health, Oswaldo Cruz Foundation, Rio de Janeiro 21040-900, RJ, Brazil.
Jorge CanedoIntegrated Center for Translational Oncology Research (CIPOT), Center for Technological Development in Health, Oswaldo Cruz Foundation, Rio de Janeiro 21040-900, RJ, Brazil.
Carlos Gil FerreiraIntegrated Center for Translational Oncology Research (CIPOT), Center for Technological Development in Health, Oswaldo Cruz Foundation, Rio de Janeiro 21040-900, RJ, Brazil.ORCID 0000-0002-7228-7018
Elen de SouzaMolecular Virology and Parasitology Laboratory, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro 21040-360, RJ, Brazil.ORCID 0000-0001-6512-6542
Aline MoreiraLaboratory of Applied Genomics and Bioinovations, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro 21040-360, RJ, Brazil.
Mariana WaghabiLaboratory of Applied Genomics and Bioinovations, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro 21040-360, RJ, Brazil.ORCID 0000-0002-1205-9507
Mariano Gustavo ZalisIntegrated Center for Translational Oncology Research (CIPOT), Center for Technological Development in Health, Oswaldo Cruz Foundation, Rio de Janeiro 21040-900, RJ, Brazil.
Tatiana TilliIntegrated Center for Translational Oncology Research (CIPOT), Center for Technological Development in Health, Oswaldo Cruz Foundation, Rio de Janeiro 21040-900, RJ, Brazil.ORCID 0000-0002-1111-018X

Funding

Carlos Chagas Filho Foundation for Research Support of the State of Rio de Janeiro (FAPERJ) E-26/201.343/2022Carlos Chagas Filho Foundation for Research Support of the State of Rio de Janeiro (FAPERJ) E-26/211.132/2021
6 · The paper itself

Abstract

Cancer patients are highly vulnerable to severe COVID-19, requiring models that capture tumor-virus interactions. We investigated tumor- and variant-specific effects of SARS-CoV-2 Gamma and Delta infections using patient-derived organoids (PDOs) from metastatic breast, lung, and colorectal cancers. Viral infection was quantified by Real-Time Quantitative Polymerase Chain Reaction (RT-qPCR) 24 h post-infection, and morphological changes and immune mediators were profiled. Genomic analysis using whole-exome sequencing was performed to identify contributing host-related gene alterations. The Delta variant produced consistently higher viral loads in lung and breast PDOs, while colorectal PDOs showed variable susceptibility. Infection led to reduced area and perimeter and increased circularity across all tumor types. Immune profiling revealed distinct responses: Gamma decreased Interferon alpha (IFNα) in lung PDOs and increased E-selectin in colorectal PDOs. Delta broadly reduced inflammatory mediators in lung [10 kDa interferon gamma-induced protein (IP-10) and Intercellular adhesion molecule 1 (ICAM-1)] and breast [Interleukin-6 (IL-6), Interleukin-13 (IL-13), and Interleukin-17A (IL-17A)] PDOs, while increasing Macrophage inflammatory protein 1-beta (MIP-1β) in colorectal PDOs. Host gene variants involved in trafficking (

Indexed as

COVID-19NeoplasmsOrganoidsSARS-CoV-2Breast NeoplasmsColorectal NeoplasmsExome SequencingFemaleHumansInflammationLung NeoplasmsViral Loadbreast cancercolorectal cancerlung cancermorphological profilingpatient-derived organoidsprecision oncologySARS-CoV-2 infection modelsSARS-CoV-2 variantstumor–virus interactions

Identifiers

PMID41683583
PMCPMC12897655

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.