Evidence map›Paper›PMID 41680906›Full record

ArticleBiology of sex differences2026

Overexpression of SOX3 due to an X chromosome inversion leading to ovotesticular difference in sex development.

Carolina Gama Nascimento-Vidoti, Helena Fabbri-Scallet, Mara Sanches Guaragna, Melissa Bittencourt de Wallau, Vanessa Sodré de Souza, Silvia Souza da Costa, Ana Cristina Victorino Krepischi, Juliana Forte Mazzeu, Claudia M B Carvalho, Andréa Trevas Maciel-Guerra and 2 more

Abstract readCase Reports
In one paragraph

Article in Biology of sex differences, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Cytogenomic Investigation of Individuals with Ovotesticular Difference of Sex Development.Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Carolina Gama Nascimento-VidotiDepartment of Medical Genetics and Genomic Medicine, School of Medical Sciences, Universidade Estadual de Campinas, Campinas, SP, Brazil.
Helena Fabbri-ScalletLaboratory of Human Molecular Genetics, Center of Molecular Biology and Genetic Engineering, Universidade Estadual de Campinas, Campinas, SP, Brazil.
Mara Sanches GuaragnaDepartment of Medical Genetics and Genomic Medicine, School of Medical Sciences, Universidade Estadual de Campinas, Campinas, SP, Brazil.
Melissa Bittencourt de WallauDepartment of Medical Genetics and Genomic Medicine, School of Medical Sciences, Universidade Estadual de Campinas, Campinas, SP, Brazil.
Vanessa Sodré de SouzaFaculty of Medicine, University of Brasilia, Brasilia, DF, Brazil.
Silvia Souza da CostaDepartment of Genetics and Evolutionary Biology, Institute of Biosciences, University of São Paulo, São Paulo, SP, Brazil.
Ana Cristina Victorino KrepischiDepartment of Genetics and Evolutionary Biology, Institute of Biosciences, University of São Paulo, São Paulo, SP, Brazil.
Juliana Forte MazzeuFaculty of Medicine, University of Brasilia, Brasilia, DF, Brazil.
Claudia M B CarvalhoPacific Northwest Research Institute (PNRI), Seattle, WA, USA.
Andréa Trevas Maciel-GuerraDepartment of Medical Genetics and Genomic Medicine, School of Medical Sciences, Universidade Estadual de Campinas, Campinas, SP, Brazil.
Gil Guerra-JúniorDepartment of Pediatrics, School of Medical Sciences, Universidade Estadual de Campinas, Campinas, SP, Brazil.
Társis Paiva VieiraDepartment of Medical Genetics and Genomic Medicine, School of Medical Sciences, Universidade Estadual de Campinas, Campinas, SP, Brazil. tpvieira@unicamp.br.

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico #311904/2025-4Fundação de Amparo à Pesquisa do Estado de São Paulo #2019/26382-3Fundação de Amparo à Pesquisa do Estado de São Paulo #2022/16766-1Fundação de Amparo à Pesquisa do Estado de São Paulo #2023/09879-7
6 · The paper itself

Abstract

Structural variants (SVs) may increase SOX3 expression in the gonads and have been observed in individuals with ovotesticular differences in sex development (OT-DSD) and XX testicular differences in sex development (T-DSD). Most of the SVs found in OT-DSD individuals are whole-gene duplications, and to date, only one SV affecting SOX3 expression by a positional effect has been described. We report an individual raised as a female with SRY-negative OT-DSD. Karyotype analysis showed a pericentric inversion in one of the X chromosomes - 46,X, inv(X)(p22;q27). The breakpoints and fusion were mapped using optical genome mapping (OGM) and short-read whole genome sequencing. One of the breakpoints was mapped on Xq27.1 (genomic position chrX:140,420,874 - GRCh38), 82 kb downstream of the SOX3 gene. This breakpoint was predicted to interrupt a topological associate domain (TAD) affecting 24 enhancer-promoter interactions of SOX3. RNA sequencing (RNA-seq) of a formalin-fixed paraffin-embedded (FFPE) sample of the gonads confirmed increased SOX3 expression. The present study is the first to analyze gene expression in gonadal tissues from an OT-DSD individual, and the first reporting an inversion-based mechanism leading to XX OT-DSD. Additionally, an X-inactivation assay on DNA extracted from the gonads revealed random inactivation. These findings support the hypothesis that inappropriate SOX3 expression may result from the positional effects of SVs, leading to OT-DSD in 46,XX individuals.

Indexed as

Chromosome InversionChromosomes, Human, XOvotesticular Disorders of Sex DevelopmentSexual DevelopmentSOXB1 Transcription FactorsFemaleHumansMaleSOX3 protein, humanSOXB1 Transcription FactorsOvotesticular difference in sex developmentPositional effect.SOX3 overexpressionStructural variants

Identifiers

PMID41680906
PMCPMC12997796

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.