Evidence map›Paper›PMID 41676157›Full record

ArticleFrontiers in immunology2026

Development and computational analysis of high dimensional spectral flow cytometry data for the resolution of innate lymphoid cells in the mammary tumor microenvironment.

Hobin Seo, Jingna Xue, Qiutong Huang, Megan Kinzel, Amisha Verma, Ngan Huynh, Zahra Jamila Ikra, Douglas J Mahoney, Jongbok Lee, Sorana Morrissy and 1 more

Abstract read
In one paragraph

Article in Frontiers in immunology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Special Issue "Flow Cytometry: Applications and Challenges".International journal of molecular sciences · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Hobin Seo *Riddell Centre for Cancer Immunotherapy, Arnie Charbonneau Cancer Institute, Arthur J.E. Child Comprehensive Cancer Centre, University of Calgary, Calgary, AB, Canada.
Jingna Xue *Riddell Centre for Cancer Immunotherapy, Arnie Charbonneau Cancer Institute, Arthur J.E. Child Comprehensive Cancer Centre, University of Calgary, Calgary, AB, Canada.
Qiutong HuangRiddell Centre for Cancer Immunotherapy, Arnie Charbonneau Cancer Institute, Arthur J.E. Child Comprehensive Cancer Centre, University of Calgary, Calgary, AB, Canada.
Megan KinzelRiddell Centre for Cancer Immunotherapy, Arnie Charbonneau Cancer Institute, Arthur J.E. Child Comprehensive Cancer Centre, University of Calgary, Calgary, AB, Canada.
Amisha VermaRiddell Centre for Cancer Immunotherapy, Arnie Charbonneau Cancer Institute, Arthur J.E. Child Comprehensive Cancer Centre, University of Calgary, Calgary, AB, Canada.
Ngan HuynhRiddell Centre for Cancer Immunotherapy, Arnie Charbonneau Cancer Institute, Arthur J.E. Child Comprehensive Cancer Centre, University of Calgary, Calgary, AB, Canada.
Zahra Jamila IkraRiddell Centre for Cancer Immunotherapy, Arnie Charbonneau Cancer Institute, Arthur J.E. Child Comprehensive Cancer Centre, University of Calgary, Calgary, AB, Canada.
Douglas J MahoneyRiddell Centre for Cancer Immunotherapy, Arnie Charbonneau Cancer Institute, Arthur J.E. Child Comprehensive Cancer Centre, University of Calgary, Calgary, AB, Canada.
Jongbok LeeRiddell Centre for Cancer Immunotherapy, Arnie Charbonneau Cancer Institute, Arthur J.E. Child Comprehensive Cancer Centre, University of Calgary, Calgary, AB, Canada.
Sorana MorrissyRiddell Centre for Cancer Immunotherapy, Arnie Charbonneau Cancer Institute, Arthur J.E. Child Comprehensive Cancer Centre, University of Calgary, Calgary, AB, Canada.
Nicolas JacquelotRiddell Centre for Cancer Immunotherapy, Arnie Charbonneau Cancer Institute, Arthur J.E. Child Comprehensive Cancer Centre, University of Calgary, Calgary, AB, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spectral flow cytometry has ushered in a new era in immunology. Through the improvement of the resolution of surface and intracellular protein expression, this approach enables in depth characterization of rare immune cell subsets, such as innate lymphoid cells (ILCs), in health and disease. Due to their heterogeneity, the identification of ILCs requires the use of many lineage marker antibodies for non-ILC exclusion, together with the analysis of several transcription factor expression profiles for ILC subset distinction. Such intricacies toward their identification and their scarcity in tissues have been key factors directly limiting their characterization, particularly during tumor development and progression. We developed, optimized and validated a 25-parameter spectral flow cytometric panel for the identification of mouse ILC subsets and characterization of their phenotype and proliferation capabilities in mouse mammary tumors. The use of conjugated antibodies coupled to different fluorochromes for the analysis of lineage marker expression further allows the identification and characterization of γδ T cells, CD4

Indexed as

Flow CytometryImmunity, InnateLymphocytesTumor MicroenvironmentAnimalsComputational BiologyFemaleImmunoinformaticsImmunophenotypingMiceadaptive lymphocytesbioinformaticsbreast cancerinnate immunityinnate lymphoid cellsspectral flow cytometryT cellstumor immunology

Identifiers

PMID41676157
PMCPMC12886383

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.