ArticleiMetaOmics2024
CPStools: A package for analyzing chloroplast genome sequences.
Article in iMetaOmics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.
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Who cites it
74 citing papers in PubMed.
- Plastome architecture and maternal relationships of cultivated almond (Prunus dulcis) and its wild relatives.Planta · 2026Article
- Comparative analysis of plastomes of Rubus cultivars and development of molecular markers for species delimitation.Plant cell reports · 2026Article
- Chloroplast Genome Sequence of Snap Bean (International journal of molecular sciences · 2026Article
- Evolutionary dynamics of the chloroplast genome in Abutilon (Malvoideae, Malvaceae).BMC plant biology · 2026Article
- Exploring the Mitochondrial Genomes ofEcology and evolution · 2026Article
- Complete chloroplast genome sequence data ofData in brief · 2026Article
- Plastome evolution and phylogenomic insights from representative taxa across all nine subfamilies of Malvaceae.BMC plant biology · 2026Article
- Comparative plastome analysis and plastomic phylogeny of Moraceae with expanded species-level sampling.BMC plant biology · 2026Article
- Comparative plastome analyses of Lewinskya (Orthotrichaceae): insights into genome structure, molecular evolution, and phylogenetic relationships.BMC plant biology · 2026Article
- Rubus chingii chloroplast genome sequences: a comparative analysis with other Rubus L.chloroplast genomes.BMC genomics · 2026Article
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- Complete Chloroplast Genome ofEcology and evolution · 2026Article
- Structural characteristics of the Phoebe hui chloroplast genome and phylogenetic analyses of Phoebe plants.BMC genomics · 2026Article
- Plastome evolution and phylogenomic relationships in Ajuga (Lamiaceae, Ajugoideae).BMC plant biology · 2026Article
- Characterisation of the chloroplast genome of Macrotyloma species: comparative analysis and phylogenomic insights.Scientific reports · 2026Article
- Article
- Complete chloroplast genomes of four Triumfetta species obtained from herbarium specimens: comparative analysis and identification of a synapomorphic inversion.Scientific reports · 2026Article
- Comparative Analysis of Complete Chloroplast Genomes ofEcology and evolution · 2026Article
- CGAS (Chloroplast Genome Analysis Suite): An automated python pipeline for comprehensive comparative chloroplast genomics.iMetaOmics · 2026Article
- Assembly and comparative analysis of the initial complete mitochondrial genome of Verbascum thapsus (Scrophulariaceae): a medicinally and ecologically significant species.BMC plant biology · 2026Article
14 more citing papers are in PubMed but not listed here.
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
CPStools is a user-friendly software for comprehensive chloroplast genome analysis. It integrates 10 functionalities including Genbank file checking, statistical information generation, sequence adjustment, inverted repeat (IR) regions identification, nucleotide diversity (Pi) analysis, relative synonymous codon usage (RSCU) calculation, simple sequence repeats (SSRs) identification, long sequence repeats (LSRs) statistics, phylogenetic analysis, and format conversion. CPStools handles Genbank or Fasta format inputs, delivering results comparable to other tools while excelling in data preparation for advanced analysis. It uniquely generates consensus merged protein-coding sequence (CDS) or protein sequences from multiple Genbank files, facilitating advanced phylogenetic analysis. CPStools offer reliable results for comprehensive chloroplast genome analysis.
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