Evidence map›Paper›PMID 41676115›Full record

ArticleiMetaOmics2024

OUTPOST: A comprehensive analysis software for whole-metagenome shotgun sequencing incorporating group stratification.

Yihang Zhou, Jihong Zheng, Wenqi Song, Xinyi Yan, Li Du, Zhonglin Ma, Yanbin Fu, Zhaohui Ouyang, Yuchen Xiao, Zhuoqun Liu and 10 more

Abstract readLetter
PubMed Full text at PMC Publisher
In one paragraph

Article in iMetaOmics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Yihang ZhouFundamental Research Center, Shanghai Yangzhi Rehabilitation Hospital (Shanghai Sunshine Rehabilitation Center), School of Life Sciences and Technology Tongji University Shanghai China.
Jihong ZhengFundamental Research Center, Shanghai Yangzhi Rehabilitation Hospital (Shanghai Sunshine Rehabilitation Center), School of Life Sciences and Technology Tongji University Shanghai China.
Wenqi SongFundamental Research Center, Shanghai Yangzhi Rehabilitation Hospital (Shanghai Sunshine Rehabilitation Center), School of Life Sciences and Technology Tongji University Shanghai China.
Xinyi YanFundamental Research Center, Shanghai Yangzhi Rehabilitation Hospital (Shanghai Sunshine Rehabilitation Center), School of Life Sciences and Technology Tongji University Shanghai China.
Li DuFundamental Research Center, Shanghai Yangzhi Rehabilitation Hospital (Shanghai Sunshine Rehabilitation Center), School of Life Sciences and Technology Tongji University Shanghai China.
Zhonglin MaState Key Laboratory of Marine Geology, School of Ocean and Earth Science Tongji University Shanghai China.
Yanbin FuDepartment of Biliary-Pancreatic Surgery, Shanghai Cancer Institute Renji Hospital Affiliated to Shanghai Jiao Tong University School of Medicine Shanghai China.
Zhaohui OuyangState Key Laboratory of Cardiology and Medical Innovation Center, Shanghai East Hospital, Shanghai Key Laboratory of Signaling and Disease Research, Frontier Science Center for Stem Cell Research, School of Life Sciences and Technology Tongji University Shanghai China.
Yuchen XiaoFundamental Research Center, Shanghai Yangzhi Rehabilitation Hospital (Shanghai Sunshine Rehabilitation Center), School of Life Sciences and Technology Tongji University Shanghai China.
Zhuoqun LiuFundamental Research Center, Shanghai Yangzhi Rehabilitation Hospital (Shanghai Sunshine Rehabilitation Center), School of Life Sciences and Technology Tongji University Shanghai China.
Feng TianHebei Key Laboratory of Medical Data Science, Institute of Biomedical Informatics, School of Medicine Hebei University of Engineering Handan China.
Jason Wing Hon WongSchool of Biomedical Sciences, Li Ka Shing Faculty of Medicine The University of Hong Kong Pokfulam, Hong Kong, SAR China.
Jen Hao David ShihSchool of Biomedical Sciences, Li Ka Shing Faculty of Medicine The University of Hong Kong Pokfulam, Hong Kong, SAR China.
Shikang LiangSchool of Biomedical Sciences, Li Ka Shing Faculty of Medicine The University of Hong Kong Pokfulam, Hong Kong, SAR China.
Honglei TianDivision of Life Science The Hong Kong University of Science and Technology Clear Water Bay, Hong Kong, SAR China.
Liu LiuShanghai Yuhui Pharmaceutical Technology (Group) Co., Ltd Shanghai China.
Ke WeiState Key Laboratory of Cardiology and Medical Innovation Center, Shanghai East Hospital, Shanghai Key Laboratory of Signaling and Disease Research, Frontier Science Center for Stem Cell Research, School of Life Sciences and Technology Tongji University Shanghai China.
Chao ZhangFundamental Research Center, Shanghai Yangzhi Rehabilitation Hospital (Shanghai Sunshine Rehabilitation Center), School of Life Sciences and Technology Tongji University Shanghai China.
Jiangtao LiState Key Laboratory of Marine Geology, School of Ocean and Earth Science Tongji University Shanghai China.
Xiaozhu WangFundamental Research Center, Shanghai Yangzhi Rehabilitation Hospital (Shanghai Sunshine Rehabilitation Center), School of Life Sciences and Technology Tongji University Shanghai China.ORCID 0000-0002-3982-1186

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The whole metagenOme shotgun seqUencing sTream Pipeline that is cOmprehensive and uSeful for mulTi groups experiments (OUTPOST) is a comprehensive analysis software for whole-metagenome shotgun sequencing incorporating group stratification, which encompasses 14 modules and boasts over 50 functions, distinguishing itself for its comprehensiveness when compared with 17 existing whole-metagenome shotgun sequencing (WMGS) tools. OUTPOST introduces innovative methods for multi-group experimental designs and meta-analysis-based biomarker identification.

Identifiers

PMID41676115
PMCPMC12806516

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.