Evidence map›Paper›PMID 41673446›Full record

ArticleThe EMBO journal2026

STI1 domain engages transient helices to mediate Dsk2 phase separation and proteasome condensation.

Nirbhik Acharya, Emily A Daniel, Thuy P Dao, Jessica K Niblo, Erin O Mulvey, Shahar Sukenik, Daniel A Kraut, Jeroen Roelofs, Carlos A Castañeda

Abstract read
In one paragraph

Article in The EMBO journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Nirbhik AcharyaDepartment of Biology, Syracuse University, Syracuse, NY, 13244, USA.ORCID http://orcid.org/0000-0003-4591-5215
Emily A DanielDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, KS, 66160, USA.ORCID http://orcid.org/0000-0002-4085-1796
Thuy P DaoDepartment of Biology, Syracuse University, Syracuse, NY, 13244, USA.
Jessica K NibloDepartment of Chemistry, Syracuse University, Syracuse, NY, 13244, USA.ORCID http://orcid.org/0000-0001-9378-6097
Erin O MulveyDepartment of Chemistry and Biochemistry, Villanova University, Villanova, PA, 19085, USA.
Shahar SukenikDepartment of Chemistry, Syracuse University, Syracuse, NY, 13244, USA.ORCID http://orcid.org/0000-0003-3855-9574
Daniel A KrautDepartment of Chemistry and Biochemistry, Villanova University, Villanova, PA, 19085, USA.ORCID http://orcid.org/0000-0002-4428-5832
Jeroen RoelofsDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, KS, 66160, USA.ORCID http://orcid.org/0000-0003-0944-2465
Carlos A CastañedaDepartment of Biology, Syracuse University, Syracuse, NY, 13244, USA. cacastan@syr.edu.ORCID http://orcid.org/0000-0001-9634-0867

Funding

Uncovering the structural underpinnings of function in disordered transcription factor regionsR35GM137926 · NIGMS · UNIVERSITY OF CALIFORNIA, MERCED · PI Shahar Sukenik · 2020 to 2026
$2.5M
Proteasome homeostasis and substrate prioritizationR35GM149314 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Jeroen Roelofs · 2023 to 2026
$1.6M
The Role and Mechanisms of UBQLN2-mediated Phase Transitions in the Assembly and Disassembly of Biomolecular CondensatesR01GM136946 · NIGMS · SYRACUSE UNIVERSITY · PI CASTANEDA, CARLOS ANTONIO · 2020 to 2024
$1.5M
Architecture and function of condensates formed by ubiquitin-binding shuttle proteins and protein quality control componentsR35GM158070 · NIGMS · SYRACUSE UNIVERSITY · PI Carlos Antonio Castaneda · 2025 to 2026
$879k
National Science Foundation (NSF) MCB1935596NIGMS NIH HHS R01 GM136946NIGMS NIH HHS R35 GM137926NIGMS NIH HHS R35 GM149314NIGMS NIH HHS R35 GM158070
6 · The paper itself

Abstract

Ubiquitin-binding shuttle proteins are important components of stress-induced biomolecular condensates in cells. Yeast Dsk2 scaffolds proteasome-containing condensates via multivalent interactions with proteasomes and polyubiquitinated substrates under stress conditions. Here, we identify the chaperone-binding STI1 domain as the main driver of Dsk2 self-association and phase separation. Using nuclear magnetic resonance (NMR) spectroscopy and computational simulations, we find that the STI1 domain interacts with three transient amphipathic helices within the intrinsically disordered regions of Dsk2. Removal of either the STI1 domain or these helices significantly reduces Dsk2's propensity to form condensates. In vivo, perturbing STI1-helix interactions, specifically removal of the transient helices, reduces the formation of azide stress-induced Dsk2/proteasome condensates, in line with our in vitro results. Modeling of Dsk2 STI1-helix interactions reveals a binding mode reminiscent of chaperone STI1/DP2 domains interacting with client helices. Our findings support a model whereby STI1-helix interactions important for Dsk2 condensate formation can be replaced by STI1-client interactions for downstream chaperone or other protein quality control outcomes.

Indexed as

Cell Cycle ProteinsProteasome Endopeptidase ComplexSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsModels, MolecularPhase SeparationProtein BindingProtein DomainsUbiquitinsCell Cycle ProteinsDSK2 protein, S cerevisiaeProteasome Endopeptidase ComplexSaccharomyces cerevisiae ProteinsUbiquitinsPhase SeparationProteasome CondensatesSTI1 DomainTransient HelicesUbiquilins

Identifiers

PMID41673446
PMCPMC13083955

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.