Strawberry atlas:

Minto Odagiri, Chonprakun Thagun, Takeshi Kurokura, Tomohiro Suzuki, Yutaka Kodama, Yoshinori Fukasawa

Abstract read

In one paragraph

Article in PeerJ, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it

0cells of the map it votes in

0citing papers in PubMed

–field-weighted citation impact

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Minto OdagiriCenter for Bioscience Research and Education, Utsunomiya University, Utsunomiya, Japan.

Chonprakun ThagunCenter for Bioscience Research and Education, Utsunomiya University, Utsunomiya, Japan.

Takeshi KurokuraCenter for Bioscience Research and Education, Utsunomiya University, Utsunomiya, Japan.

Tomohiro SuzukiCenter for Bioscience Research and Education, Utsunomiya University, Utsunomiya, Japan.

Yutaka KodamaCenter for Bioscience Research and Education, Utsunomiya University, Utsunomiya, Japan.

Yoshinori FukasawaCenter for Bioscience Research and Education, Utsunomiya University, Utsunomiya, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Methods: After quality control that removed mutant and infected samples, 233 high-quality RNA-seq libraries covering more than 50 tissues and developmental stages were retained. These libraries were consolidated into nine tissue categories: leaf, root, anther, carpel, flower bud, seed, stem, early fruit, and late fruit (mature fruit). In-house leaf libraries were used as a reference to validate data structure and batch correction. Transcript abundance was quantified against the latest Results: The resulting expression atlas captures a certain level of expression for ∼99% of 36,173 annotated genes that include TS genes. It also reveals robust clustering by tissue, underscoring the biological coherence of the integrated dataset. Expression profiling identified tissue-enriched genes in photosynthesis, flavonoid biosynthesis, and fruit ripening, and a core set of 719 stably expressed HK genes. SVs were significantly underrepresented in coding exons, and genes overlapping SVs had reduced expression. One example,

Indexed as

FragariaGene Expression Regulation, PlantGenome, PlantGenomicsFruitGene Expression ProfilingExpression atlasFragaria vescaHousekeeping geneStructural variantsWild strawberry

Identifiers

PMID41664659

DOI10.7717/peerj.20740

PMCPMC12883160

What OpenQuestion holds

Textmetadata

LicenceCC BY

Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.