Evidence map›Paper›PMID 41663843›Full record

ArticleThe EMBO journal2026

Direct visualization and tracing of chromatin folding in the Drosophila embryo.

Fadwa Fatmaoui, Pascal Carrivain, Fatima Taiki, Amina Iusupova, Diana Grewe, Wim Hagen, Burkhard Jakob, Jean-Marc Victor, Amélie Leforestier, Mikhail Eltsov

Abstract read
In one paragraph

Article in The EMBO journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Fadwa FatmaouiCentre for Integrative Biology (CBI), Department of Integrated Structural Biology, IGBMC, CNRS, Inserm, Université de Strasbourg, Illkirch, France.
Pascal Carrivain *Laboratoire de Physique Théorique de la Matière Condensée (LPTMC), CNRS, Sorbonne Université, Paris, France.
Fatima Taiki *Laboratoire de Physique des Solides (LPS), CNRS, Université Paris-Saclay, Orsay, France.
Amina Iusupova *Centre for Integrative Biology (CBI), Department of Integrated Structural Biology, IGBMC, CNRS, Inserm, Université de Strasbourg, Illkirch, France.ORCID http://orcid.org/0009-0001-5919-7907
Diana GreweBuchmann Institute for Molecular Life Sciences, Goethe University, Frankfurt am Main, Germany.
Wim HagenEMBL Imaging Centre, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-6229-2692
Burkhard JakobDepartment of Biophysics, GSI Helmholtzzentrum für Schwerionenforschung, Darmstadt, Germany.ORCID http://orcid.org/0000-0003-2404-377X
Jean-Marc VictorLaboratoire de Physique Théorique de la Matière Condensée (LPTMC), CNRS, Sorbonne Université, Paris, France. jean-marc.victor@sorbonne-universite.fr.ORCID http://orcid.org/0000-0002-3815-8896
Amélie LeforestierLaboratoire de Physique des Solides (LPS), CNRS, Université Paris-Saclay, Orsay, France. amelie.leforestier@universite-paris-saclay.fr.ORCID http://orcid.org/0000-0002-0225-2776
Mikhail EltsovCentre for Integrative Biology (CBI), Department of Integrated Structural Biology, IGBMC, CNRS, Inserm, Université de Strasbourg, Illkirch, France. eltsovm@igbmc.fr.ORCID http://orcid.org/0000-0003-2298-8964

Funding

Agence Nationale de la Recherche (ANR) ANR-10-INSB-005Agence Nationale de la Recherche (ANR) ANR-20-CE11-0020-01Agence Nationale de la Recherche (ANR) ANR-20-CE11-0020-02Agence Nationale de la Recherche (ANR) ANR-20-CE11-0020-04Agence Nationale de la Recherche (ANR) ANR-23-CE45-0012-01Deutsche Forschungsgemeinschaft (DFG) DFG EL 861German Federal Ministry of Education and Research BMBF 02NUK054AiNEXT-Discovery support for the access to the Cryo-EM instrumentation iNEXT-Discovery (No. 871037),an EC H2020 project
6 · The paper itself

Abstract

Chromatin organization, through the assembly of DNA with histones and the folding of nucleosome chains, regulates DNA accessibility for transcription, DNA replication and repair. Although models derived from in vitro studies have proposed distinct nucleosome chain geometries, the organization of chromatin within the crowded cell nucleus remains elusive. Using cryo-electron tomography of thin vitreous sections, we directly observed the path of nucleosomal and linker DNA in situ from a flash-frozen organism - Drosophila embryos. We quantified linker length and curvature, characterizing an irregular zig-zag chromatin-folding motif, with a low degree of linker bending. Nucleosome conformations could be identified on individual particles in favorable orientations without structure averaging. Additionally, we observed particles that accommodate a number of DNA gyres ranging from less than one to up to three, which resemble previously proposed non-octameric nucleosomal particles with variable DNA wrapping.

Indexed as

ChromatinDrosophilaDrosophila melanogasterEmbryo, NonmammalianNucleosomesAnimalsCryoelectron MicroscopyDNAElectron Microscope TomographyHistonesChromatinDNAHistonesNucleosomesChromatin FiberIn Situ Cryo-Electron TomographyLinker DNANucleosomeSub-Nucleosomal Particles

Identifiers

PMID41663843
PMCPMC12954082

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.