Evidence map›Paper›PMID 41663437›Full record

ArticleNature communications2026

Molecular mechanism of action of small molecule SMT-738 on bacterial lipoprotein transporter LolCDE.

Haotian Li, Xiaojing Zhu, Dongdong Zhang, Xiaofeng Duan, Jiahui Li, Yao Qu, Danyang Li, Zhengyu Zhang, Haohao Dong, Feng-Biao Guo and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Haotian Li *Department of Thyroid and Breast Surgery, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, China.
Xiaojing Zhu *Department of Thyroid and Breast Surgery, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, China.ORCID 0000-0003-4081-7245
Dongdong Zhang *Key laboratory of combinatorial Biosynthesis and drug discovery, Ministry of education, School of Pharmaceutical Sciences, Wuhan University, Wuhan, China.ORCID 0000-0002-1797-5459
Xiaofeng DuanDepartment of Thyroid and Breast Surgery, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, China.
Jiahui LiDepartment of Thyroid and Breast Surgery, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, China.
Yao QuDepartment of Thyroid and Breast Surgery, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, China.
Danyang LiThe cryo-EM centre, core facility of Wuhan University, Wuhan University, Wuhan, China.
Zhengyu ZhangDepartment of Thyroid and Breast Surgery, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, China. zhengyu.zhang@whu.edu.cn.ORCID 0000-0001-5035-1229
Haohao DongDepartment of Laboratory Medicine, State Key Laboratory of Biotherapy, National Clinical Research Center for Geriatrics, West China Hospital, Sichuan University and Collaborative Innovation Center of Biotherapy, Chengdu, China. haohaodong@scu.edu.cn.ORCID 0000-0002-5022-3494
Feng-Biao GuoKey laboratory of combinatorial Biosynthesis and drug discovery, Ministry of education, School of Pharmaceutical Sciences, Wuhan University, Wuhan, China. fbguoy@whu.edu.cn.ORCID 0000-0002-1129-5233
Changjiang DongDepartment of Thyroid and Breast Surgery, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, China. changjiangdong@whu.edu.cn.ORCID 0000-0002-7020-5648

Funding

National Natural Science Foundation of China (National Science Foundation of China) 2021YFA1301900National Natural Science Foundation of China (National Science Foundation of China) 2022YFA1303500National Natural Science Foundation of China (National Science Foundation of China) 32250710142National Natural Science Foundation of China (National Science Foundation of China) 32370696Science Foundation for Excellent Youth Scholars of Sichuan University 2024NSFJQ0002
6 · The paper itself

Abstract

SMT-738 is a small molecule with promising antibacterial activity against Enterobacteriaceae, including multi-drug-resistant Escherichia coli. Mutations in genes encoding the lipoprotein transport complex (LolCDE) confer resistance to SMT-738. Here, we report the cryogenic electron microscopy structure of the LolCDE-SMT-738 complex at a high resolution. We use mutagenesis, drug resistance assays, biochemical assays, and molecular dynamics simulations to show that SMT-738 binds to the periplasmic end of the LolCE transmembrane domains. This binding induces an allosteric conformational change in the cytoplasmic end of the LolCE transmembrane domains and the coupling helices, leading to dissociation of one LolD subunit from the LolCDE complex. This structural disruption results in a "deadlock" of the LolCDE complex, rendering a transport-incompetent state. Our findings also provide insights into the mechanism of SMT-738 resistance and selectivity.

Indexed as

Anti-Bacterial AgentsEscherichia coliEscherichia coli ProteinsLipoproteinsMembrane Transport ProteinsATP-Binding Cassette TransportersCryoelectron MicroscopyMolecular Dynamics SimulationMutationProtein BindingAnti-Bacterial AgentsATP-Binding Cassette TransportersEscherichia coli ProteinsLipoproteinsLolC protein, E coliLolD protein, E coliMembrane Transport Proteins

Identifiers

PMID41663437
PMCPMC13000274

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.