Evidence map›Paper›PMID 41662406›Full record

ArticlePLOS global public health2026

Transmission dynamics of Klebsiella pneumoniae in a neonatal intensive care unit in Zambia before and after an infection control bundle.

Laura T Phillips, Matthew Bates, Susan E Coffin, Ebenezer Foster-Nyarko, Monica Kapasa, Sylvia Machona, Lawrence Mwananyanda, James C L Mwansa, Chileshe L Musyani, John M Tembo and 3 more

Abstract read
In one paragraph

Article in PLOS global public health, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Observational
  3. Genomic analysis ofbioRxiv : the preprint server for biology · 2026
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Laura T PhillipsDepartment of Infection Biology, London School of Hygiene & Tropical Medicine, London, United Kingdom.ORCID https://orcid.org/0000-0002-6453-0129
Matthew BatesSchool of Natural Sciences, University of Lincoln, Lincoln, United Kingdom.ORCID https://orcid.org/0000-0003-0464-1529
Susan E CoffinDepartment of Pediatrics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.ORCID https://orcid.org/0000-0001-9566-5600
Ebenezer Foster-NyarkoDepartment of Infection Biology, London School of Hygiene & Tropical Medicine, London, United Kingdom.
Monica KapasaDepartment of Pediatrics, University Teaching Hospital, Lusaka, Zambia.
Sylvia MachonaNeonatology Department, University Teaching Hospital, Lusaka, Zambia.
Lawrence MwananyandaBiomedical Department, Right to Care, Lusaka, Zambia.
James C L MwansaDirectorate of Research and Post Graduate Studies, Lusaka Apex Medical University, Lusaka, Zambia.ORCID https://orcid.org/0000-0003-0726-8889
Chileshe L MusyaniInstitute of Basic and Biomedical Sciences, Levy Mwanawasa Medical University, Lusaka, Zambia.ORCID https://orcid.org/0000-0002-0262-4779
John M TemboHerpeZ, University Teaching Hospital, Lusaka, Zambia.
Franklyn N EgbeInstitute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, United Kingdom.
Kathryn E HoltDepartment of Infection Biology, London School of Hygiene & Tropical Medicine, London, United Kingdom.ORCID https://orcid.org/0000-0003-3949-2471
Davidson H HamerDepartment of Global Health, Boston University School of Public Health, Boston, Massachusetts, United States of America.ORCID https://orcid.org/0000-0002-4700-1495

Funding

Bill & Melinda Gates Foundation INV-005691
6 · The paper itself

Abstract

Klebsiella pneumoniae is a leading cause of neonatal sepsis in low- and middle-income countries, with antimicrobial resistance (AMR) significantly contributing to mortality. We used whole genome sequencing to explore the impact of an infection prevention and control (IPC) intervention on K. pneumoniae strains and transmission dynamics responsible for sepsis in a Zambian neonatal unit. Blood culture isolates were collected during the Sepsis Prevention in Neonates in Zambia (SPINZ) study, including a 7-month baseline period and 12 months following implementation of a low-cost IPC bundle. K. pneumoniae genomes associated with 411 neonatal infections were characterised, comprising 24 unique sequence types (STs) and dominated by ST307 (69.3%, n = 285). Nearly all isolates (99.0%) carried extended spectrum beta-lactamases, but few carried carbapenemases (2.7%). Most infections (95.6%) were associated with probable transmission clusters, ranging in size from 2-202 patients and spanning durations of 2-232 days. Most K. pneumoniae (n = 228, 70%) were isolated during the 7-month baseline period and formed six clusters, including one cluster of >200 neonates infected with ST307. Transmission of all strains was periodically suppressed by an IPC bundle; however not all strains were eliminated, and some were able to re-emerge later to re-establish infection and transmission, alongside newly introduced strains that formed additional transmission clusters. Some clusters were associated with rapid onset of disease (within 2 days of admission) and others with delayed onset, suggesting different sources of contamination (e.g., reagent vs environmental). These findings reinforce the need for sustained IPC efforts, and better understanding of environmental reservoirs of opportunistic pathogens in neonatal units to inform such efforts.

Identifiers

PMID41662406
PMCPMC12885268

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.