Evidence map›Paper›PMID 41662371›Full record

ArticlePloS one2026

Validation of an agent-based model for cell interactions in a microfluidic chip.

Simona Panunzi, Marcello Pompa, Pietro Marco D'Angelo, Gabriella Bretti, Andrea De Gaetano

Abstract readValidation Study
In one paragraph

Article in PloS one, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Simona PanunziInstitute of Systems Analysis and Informatics "A. Ruberti" (IASI) - National Research Council of Italy, Rome, Italy.ORCID https://orcid.org/0000-0003-0956-8578
Marcello PompaInstitute of Systems Analysis and Informatics "A. Ruberti" (IASI) - National Research Council of Italy, Rome, Italy.ORCID https://orcid.org/0000-0001-9757-6310
Pietro Marco D'AngeloCampus Biomedico di Roma, Rome, Italy.ORCID https://orcid.org/0009-0005-9775-286X
Gabriella BrettiInstitute for Applied Mathematics "Mauro Picone" (IAC) - National Research Council of Italy, Rome, Italy.
Andrea De GaetanoInstitute of Systems Analysis and Informatics "A. Ruberti" (IASI) - National Research Council of Italy, Rome, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesMicrofluidic cell Co-Culture, Tissue Co-Culture and Organ-on-Chip (OoC) technologies enable modeling of tissues and organs in vitro, facilitating cell-environment interaction studies and early therapeutic evaluation. The combination of physiology-based models, agent-based models (ABMs), cellular automata, and in-vitro modelling of complex processes provides a powerful tool to formalize, quantify, and predict observed phenomena.

methodsEstimating parameters for these hybrid computational models using observational data is challenging. Approximate Bayesian computation (ABC) is particularly well suited for this task due to the intractability of the likelihood function. This work extends a hybrid ABM for a cell co-culture experiment on a chip. Cell tracking data is used to estimate model parameters via a Sequential Monte Carlo ABC (ABC-SMC) approach.

resultsThe resulting model accurately reproduces observed cellular behavior and distinguishes between different experimental conditions.

conclusionThe combination of cell co-culture and microfluidic technology with hybrid computational models and ABC-SMC provides a robust framework for modeling and predicting cellular behavior in vitro, enhancing the potential for early therapeutic evaluation and understanding of cell-environment interactions.

Indexed as

Cell CommunicationLab-On-A-Chip DevicesMicrofluidic Analytical TechniquesMicrofluidicsModels, BiologicalAnimalsBayes TheoremCoculture TechniquesComputer SimulationHumansMicrophysiological SystemsMonte Carlo Method

Identifiers

PMID41662371
PMCPMC12885325

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.