Evidence map›Paper›PMID 41660984›Full record

SynthesisMicrobiology spectrum2026

Meta-analysis of public raw sequence data unveils the distribution and dynamics of emerging aquatic pathogens: using Macrobrachium rosenbergii golda virus as a case study.

Chantelle Hooper, Ronny van Aerle, David Ryder, Nicola M Coyle

Abstract readMeta-Analysis
PubMed Full text at PMC Publisher
In one paragraph

Synthesis in Microbiology spectrum, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Chantelle HooperCentre for Environment Fisheries and Aquaculture Science (Cefas), Weymouth, Dorset, United Kingdom.ORCID 0000-0002-9394-5577
Ronny van AerleCentre for Environment Fisheries and Aquaculture Science (Cefas), Weymouth, Dorset, United Kingdom.
David RyderCentre for Environment Fisheries and Aquaculture Science (Cefas), Weymouth, Dorset, United Kingdom.
Nicola M CoyleCentre for Environment Fisheries and Aquaculture Science (Cefas), Weymouth, Dorset, United Kingdom.

Funding

Cefas Seedcorn project DP1000Defra project AHPFFXGenomics for Animal and Plant Disease Consortium (GAP-DC II) provided by Defra and UK Research and Innovation (UKRI)
6 · The paper itself

Abstract

Searching publicly archived sequence data for emerging aquatic animal pathogens is a powerful but challenging approach for increasing our understanding of newly identified or poorly characterized organisms. However, searching for target sequences within the sequence read archive (SRA) database requires significant time, data storage, and computing power, limiting its accessibility. Utilizing a new database, Logan, we undertook a meta-analysis of SRA data sets to investigate the presence of an emerging virus, Macrobrachium rosenbergii golda virus (MrGV). MrGV was first characterized in

Indexed as

PalaemonidaeAnimalsChinaIndiaPhylogenyThailandaquatic animal healthdata miningemerging diseaseLogan databaseMacrobrachium rosenbergiiMrGV

Identifiers

PMID41660984
PMCPMC12955490

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.