Evidence map›Paper›PMID 41660836›Full record

ArticleJournal of clinical microbiology2026

A tiled amplicon protocol for culture-free whole-genome sequencing of

Chaney C Kalinich, Freddy L Gonzalez, Alice Osmaston, Mallery I Breban, Isabel Distefano, Candy Leon, Jorge Coronel, Grace Tan, Valeriu Crudu, Nelly Ciobanu and 15 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Journal of clinical microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors.

Chaney C Kalinich *Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA.
Freddy L Gonzalez *Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, USA.
Alice OsmastonDepartment of Infection, Immunity, and Inflammation, Institute of Child Health, University College London, London, England.
Mallery I BrebanDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA.
Isabel DistefanoDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA.
Candy LeonUniversidad Peruana Cayetano Heredia, Lima, Peru.
Jorge CoronelUniversidad Peruana Cayetano Heredia, Lima, Peru.
Grace TanDepartment of Infection, Immunity, and Inflammation, Institute of Child Health, University College London, London, England.
Valeriu CruduInstitute of Phthisiopneumology, Chisinau, Moldova.
Nelly CiobanuInstitute of Phthisiopneumology, Chisinau, Moldova.
Alexandru CodreanuInstitute of Phthisiopneumology, Chisinau, Moldova.
Walter SolanoUniversidad Peruana Cayetano Heredia, Lima, Peru.
Jimena RáezUniversidad Peruana Cayetano Heredia, Lima, Peru.
Patricia SheenUniversidad Peruana Cayetano Heredia, Lima, Peru.ORCID 0000-0002-7118-9301
Mirko ZimicUniversidad Peruana Cayetano Heredia, Lima, Peru.ORCID 0000-0002-7203-8847
Orchid M AllicockDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA.ORCID 0000-0002-6570-5453
Chrispin ChaguzaDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA.
Anne L WyllieDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA.
Matthew BrandtDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA.
Daniel M WeinbergerDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA.ORCID 0000-0003-1178-8086
Benjamin SobkowiakDepartment of Infection, Immunity, and Inflammation, Institute of Child Health, University College London, London, England.
Ted CohenDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA.
Louis GrandjeanDepartment of Infection, Immunity, and Inflammation, Institute of Child Health, University College London, London, England.
Nathan D GrubaughDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA.
Seth N RedmondDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA.ORCID 0000-0003-2653-760X

Funding

CDC HHS CK22-2204CDC HHS NU50CK000629Great Ormond Street Institute of Child Health PhD FellowshipNIH HHS 1S10OD030363-01A1NIH HHS 5R01AI146338-02NIH HHS Medical Student FellowshipWellcome Trust 226007/Z/22/ZYale University Richard K. Gershon Endowed Medical Student Fellowship
6 · The paper itself

Abstract

Whole-genome sequencing of

Indexed as

Genome, BacterialMycobacterium tuberculosisTuberculosisWhole Genome SequencingHumansamplicon sequencinggenomic epidemiologyMycobacterium tuberculosispathogen genomics

Identifiers

PMID41660836
PMCPMC12977623

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.