Evidence map›Paper›PMID 41659742›Full record

ArticlePhenomics (Cham, Switzerland)2025

Retinol-driven Gene Signatures Predict Lung Adenocarcinoma Outcomes and Highlight PAICS as a Therapeutic Opportunity.

Guangyao Shan, Binyang Pan, Yongxing Zhang, Shencheng Ren, Zhaolin Zheng, Yunyi Bian, Guangyu Yao, Hong Fan

Abstract read
In one paragraph

Article in Phenomics (Cham, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Guangyao Shan *Department of Thoracic Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200032 China.ORCID 0000-0002-2993-5817
Binyang Pan *Department of Thoracic Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200032 China.ORCID 0009-0000-7168-3839
Yongxing Zhang *Department of Thoracic Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200032 China.ORCID 0009-0002-2434-533X
Shencheng RenDepartment of Thoracic Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200032 China.ORCID 0009-0000-2471-8955
Zhaolin ZhengDepartment of Thoracic Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200032 China.ORCID 0009-0009-8456-7840
Yunyi BianDepartment of Thoracic Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200032 China.ORCID 0000-0003-3864-1199
Guangyu YaoDepartment of Thoracic Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200032 China.ORCID 0000-0001-7389-0401
Hong FanDepartment of Thoracic Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200032 China.ORCID 0000-0002-2005-1150

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Retinol, a pivotal regulator of cellular growth and apoptosis, has garnered substantial attention for its intricate involvement in cancer development. To explore Vitamin A's impact on lung adenocarcinoma (LUAD), we utilized comprehensive datasets from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) to dissect the intricate role of retinol in cancer progression. The unsupervised clustering analysis, grounded on retinol metabolism gene sets, divided patients into two distinct clusters, with cluster 1 exhibiting significantly inferior survival outcomes. Through differential analysis, we uncovered 349 differentially mutated and 394 differentially expressed genes between these clusters. Leveraging these discoveries, we built a seven-gene signature model that precisely predicted poorer survival for patients with a higher risk score, which was subsequently validated in four independent GEO cohorts, demonstrating its robustness and reliability. Our drug sensitivity analysis further revealed that high-risk patients were more susceptible to gefitinib and erlotinib. Notably, leveraging gene dependency scores and RNA-seq data from LUAD cell lines, we identified Supplementary Information: The online version contains supplementary material available at 10.1007/s43657-025-00223-y.

Indexed as

Lung AdenocarcinomaPrognosisTrancriptomicsVitamin A

Identifiers

PMID41659742
PMCPMC12881200

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.