Evidence map›Paper›PMID 41659573›Full record

ArticlebioRxiv : the preprint server for biology2026

A bireporter recombinant SARS-CoV-2 Omicron BA.5 for

Esteban M Castro, Ramya S Barre, Chengjin Ye, Brian Imbiakha, Shahrzad Ezzatpour, Anastasija Cupic, Mark R Walter, James J Kobie, Richard K Plemper, Adolfo García-Sastre and 3 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Esteban M CastroTexas Biomedical Research Institute, San Antonio, TX, USA.
Ramya S BarreTexas Biomedical Research Institute, San Antonio, TX, USA.
Chengjin YeTexas Biomedical Research Institute, San Antonio, TX, USA.ORCID 0000-0002-1934-9494
Brian ImbiakhaDepartment of Microbiology, College of Agriculture and Life Sciences, Cornell University, Ithaca, NY, USA.
Shahrzad EzzatpourDepartment of Microbiology, College of Agriculture and Life Sciences, Cornell University, Ithaca, NY, USA.
Anastasija CupicDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Mark R WalterDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL, USA.ORCID 0000-0003-2163-5550
James J KobieDepartment of Medicine, Division of Infectious Diseases, University of Alabama at Birmingham, Birmingham, AL, USA.ORCID 0000-0001-8069-0272
Richard K PlemperCenter for Translational Antiviral Research, Institute for Biomedical Sciences, Georgia State University, Atlanta, Georgia, USA.
Adolfo García-SastreDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Ahmed MostafaTexas Biomedical Research Institute, San Antonio, TX, USA.
Hector C AguilarDepartment of Microbiology, College of Agriculture and Life Sciences, Cornell University, Ithaca, NY, USA.
Luis Martinez-SobridoTexas Biomedical Research Institute, San Antonio, TX, USA.ORCID 0000-0001-7084-0804

Funding

NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00014 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GARCIA-SASTRE, ADOLFO · 2021 to 2025
$62.6M
Project 6 - Development of Antivirals against AlphavirusesU19AI171403 · NIAID · EMORY UNIVERSITY · PI George Robert Painter, Richard K. Plemper · 2022 to 2026
$59.7M
SARS-CoV adaptations through a Systems Biology Lens (SYBIL)U19AI135972 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Adolfo Garcia-Sastre · 2018 to 2026
$27.2M
Technology Development Project - Increasing the complexity of ex vivo human airway models for studying immune response to viral infectionU19AI142733 · NIAID · JACKSON LABORATORY · PI Damien Chaussabel · 2019 to 2026
$23.1M
TRAINING PROGRAM: MECHANISMS OF VIRUS-HOST INTERACTIONST32AI007647 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI Domenico Tortorella · 2000 to 2026
$11.5M
Mechanism-based Targeting of the RNA Processing Machinery of SARS-CoV-2R01AI161363 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI GUPTA, YOGESH K · 2021 to 2025
$3.2M
Science as a Team Sport: Leveling the playing field and setting the rules of engagement.T32GM148752 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI GRIFFITH, ANN VENABLES, OYAJOBI, BABATUNDE OLUKAYODE · 2023 to 2024
$874k
NIAID NIH HHS 75N93021C00014NIAID NIH HHS R01 AI161363NIAID NIH HHS T32 AI007647NIAID NIH HHS U19 AI135972NIAID NIH HHS U19 AI142733NIAID NIH HHS U19 AI171403NIGMS NIH HHS T32 GM148752
6 · The paper itself

Abstract

The continuous emergence of variants of concern (VoC) represent a significant challenge to effectively control SARS-CoV-2. Although FDA-approved vaccines and antivirals have been successfully developed and implemented for the prophylactic and therapeutic intervention of SARS-CoV-2 infection, recent VoC could escape protection garnered by previous vaccine and antiviral approaches. Determining the efficacy of prophylactics and/or therapeutics against recent VoC will assist in efficiently controlling currently circulating SARS-CoV-2 strains. We used our previously described bacterial artificial chromosome (BAC)-based reverse genetics approach for Omicron BA.5 to generate a recombinant SARS-CoV-2 BA.5 encoding a fusion of ZsGreen to Nanoluciferase (rBA.5 ZsG-Nluc) from the locus of the viral nucleocapsid (N) protein separated by the porcine teschovirus-1 (PTV-1) 2A proteolytic cleavage site. The rBA5 ZsG-Nluc replicates to levels comparable to recombinant BA.5 wild-type (rBA.5 WT) and expresses high levels of ZsG and Nluc in cultured cells. This facilitates tracking viral infection and the identification of antivirals and neutralizing antibodies (NAbs) with EC

Indexed as

ex vivofluorescencein vitroin vivoin vivo imaging systemnanoluciferasereporter virusSARS-CoV-2

Identifiers

PMID41659573
PMCPMC12873858

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.