Evidence map›Paper›PMID 41659528›Full record

ArticlebioRxiv : the preprint server for biology2026

A dramatic protein fold switch powers a bactericidal nanomachine.

Yao He, Annie Si Cong Li, Xiaoying Cai, Shoichi Tachiyama, Rajeev Kumar, Devlina Chakravarty, Lauren L Porter, Jun Liu, Alan R Davidson, Z Hong Zhou

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yao HeDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles (UCLA), Los Angeles, CA, USA.ORCID 0000-0002-1368-6422
Annie Si Cong LiDepartment of Biochemistry, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0002-4736-0762
Xiaoying CaiDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles (UCLA), Los Angeles, CA, USA.ORCID 0000-0001-6694-2154
Shoichi TachiyamaMicrobial Sciences Institute, Yale University, West Haven, CT 06516, USA.ORCID 0000-0003-2010-212X
Rajeev KumarMicrobial Sciences Institute, Yale University, West Haven, CT 06516, USA.ORCID 0000-0003-2969-191X
Devlina ChakravartyNational Library of Medicine, National Institutes of Health, Bethesda MD 20894, USA.
Lauren L PorterNational Library of Medicine, National Institutes of Health, Bethesda MD 20894, USA.ORCID 0000-0003-2031-8326
Jun LiuMicrobial Sciences Institute, Yale University, West Haven, CT 06516, USA.ORCID 0000-0003-3108-6735
Alan R DavidsonDepartment of Biochemistry, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0002-0744-9199
Z Hong ZhouDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles (UCLA), Los Angeles, CA, USA.ORCID 0000-0002-8373-4717

Funding

Structure-Function Relationships in the Spirochetal Flagellar MotorR01AI087946 · NIAID · YALE UNIVERSITY · PI LIU, JUN · 2010 to 2025
$6.6M
High-Resolution CryoEM Reconstruction of Large ComplexesR01GM071940 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHOU, Z HONG · 2006 to 2025
$5.0M
In situ atomic structures of the Kaposi's sarcoma-associated herpesvirus portal-terminase complex and glycoproteinsR01DE025567 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WU, TING-TING, ZHOU, Z HONG · 2016 to 2024
$4.0M
High-throughput electron cryo-microscopeS10OD023603 · OD · YALE UNIVERSITY · PI SIGWORTH, FREDERICK J · 2018 to 2018
$1.9M
Initiation of Phage InfectionR01GM124378 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MOLINEUX, IAN J · 2017 to 2020
$1.3M
Direct Detection Device for atomic resolution cryoEM of macromolecular complexesS10OD018111 · OD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2014 to 2014
$598k
NIAID NIH HHS R01 AI087946NIDCR NIH HHS R01 DE025567NIGMS NIH HHS R01 GM071940NIGMS NIH HHS R01 GM124378NIH HHS S10 OD018111NIH HHS S10 OD023603
6 · The paper itself

Abstract

Fold switching, where a protein region interconverts between entirely distinct three-dimensional structures, is emerging as vital for certain protein functions. Here, we report a remarkable example in the F7 pyocin, a phage tail-like bactericidal nanomachine. Cryogenic electron microscopy and tomography reveal that a 163-residue segment of the central tail fiber undergoes a dramatic transition-from a trimeric α-helical coiled-coil to a triangular β-prism-upon binding to the bacterial cell surface. This massive fold switch remodels the tail tip, ejects the internal tape measure protein, and drives membrane puncture. Site-directed mutations that selectively destabilize the β-prism conformation completely abolish bactericidal activity without impairing particle assembly, implying that the energy released during this transition powers penetration. AlphaFold-based analyses further predict similar large-scale coiled-coil to β-prism switches in diverse non-contractile phage tails. This discovery reveals a sophisticated, ATP-independent strategy for microbial warfare and opens exciting possibilities for engineering next-generation bacteriocins to combat multidrug-resistant pathogens.

Identifiers

PMID41659528
PMCPMC12874032

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.