Evidence map›Paper›PMID 41658008›Full record

ArticleFrontiers in microbiology2025

Without safeguards, AI-Biology integration risks accelerating future pandemics.

Dianzhuo Wang, Marian Huot, Zechen Zhang, Kaiyi Jiang, Eugene I Shakhnovich, Kevin M Esvelt

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Constrained Evolutionary Funnels Shape Viral Immune Escape.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Dianzhuo Wang *Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, United States.
Marian Huot *Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, United States.
Zechen ZhangDepartment of Physics and Center for Brain Science, Harvard University, Cambridge, MA, United States.
Kaiyi JiangOmenn-Darling Bioengineering Institute, Princeton University, Princeton, NJ, United States.
Eugene I ShakhnovichDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, United States.
Kevin M EsveltMedia Lab, Massachusetts Institute of Technology, Cambridge, MA, United States.

Funding

Biophysical foundations of evolutionary dynamicsR35GM139571 · NIGMS · HARVARD UNIVERSITY · PI SHAKHNOVICH, EUGENE I · 2021 to 2025
$3.9M
NIGMS NIH HHS R35 GM139571
6 · The paper itself

Abstract

Artificial intelligence now shapes the design of biological matter. Protein language models (pLMs), trained on millions of natural sequences, can predict, generate, and optimize functional proteins with minimal human input. When embedded in experimental pipelines, these systems enable closed-loop biological design at unprecedented speed. The same convergence that accelerates vaccine and therapeutic discovery, however, also creates new dual-use risks. We first map recent progress in using pLMs for fitness optimization across proteins, then critically assess how these approaches have been applied to viral evolution and how they intersect with laboratory workflows, including active learning and automation. Building on this analysis, we outline a capability-oriented framework for integrated AI-biology systems, identify evaluation challenges specific to biological outputs, and propose research directions for training- and inference-time safeguards.

Indexed as

biosecuritydual use research of concern (DURC)intelligent automated biologyprotein designprotein language models

Identifiers

PMID41658008
PMCPMC12872745

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.