Evidence map›Paper›PMID 41652543›Full record

ReviewBMC genomics2026

Cookbook for plant genome sequences.

Julie Anne Vieira Salgado de Oliveira, Nancy Choudhary, Samuel Nestor Meckoni, Melina Sophie Nowak, Marie Hagedorn, Boas Pucker

Abstract readReview
PubMed Full text at PMC Publisher
In one paragraph

Review in BMC genomics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Julie Anne Vieira Salgado de Oliveira *Plant Biotechnology and Bioinformatics, IZMB, University of Bonn, Kirschallee 1, Bonn, 53115, Germany.
Nancy Choudhary *Plant Biotechnology and Bioinformatics, IZMB, University of Bonn, Kirschallee 1, Bonn, 53115, Germany.
Samuel Nestor Meckoni *Plant Biotechnology and Bioinformatics, IZMB, University of Bonn, Kirschallee 1, Bonn, 53115, Germany.
Melina Sophie NowakTU Braunschweig, Braunschweig, 38106, Germany.
Marie HagedornPlant Biotechnology and Bioinformatics, IZMB, University of Bonn, Kirschallee 1, Bonn, 53115, Germany.
Boas PuckerPlant Biotechnology and Bioinformatics, IZMB, University of Bonn, Kirschallee 1, Bonn, 53115, Germany. pucker@uni-bonn.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Access to genome sequences is crucial to investigate and engineer traits in plants, explore biodiversity, and support phylogenetic studies. Over the last decade, affordable sequencing devices have substantially increased the size of the genomics community by enabling individual research groups to sequence the genomes of plant species of interest. There has also been a quick development of novel tools for sequencing data analysis. Here, we share experiences with plant long-read genomics methods for Oxford Nanopore Technologies (ONT) and provide hands-on guidelines to support newcomers entering plant genomics. The full workflow from planning a plant genome sequencing project to the public release of associated data sets is covered.

Indexed as

Genome, PlantGenomicsPlantsSequence Analysis, DNAHigh-Throughput Nucleotide SequencingNanopore SequencingLong read sequencingONT sequencingPlant genomicsPore-C

Identifiers

PMID41652543
PMCPMC12931034

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.