Evidence map›Paper›PMID 41651870›Full record

ArticleScientific data2026

Multidimensional transcriptome dataset for systematic evaluation of Jakyakgamcho-tang-induced cell signatures.

Su-Jin Baek, Haeseung Lee, Sang-Min Park, Aeyung Kim, No Soo Kim, Eun-Hye Seo, A Yeong Lee, Yu Ri Kim, Wook Jin Kim, Kyu-Won Seo and 3 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Su-Jin Baek *Korean Medicine (KM) Data Division, Korea Institute of Oriental Medicine, Daejeon, 34054, Republic of Korea.
Haeseung Lee *College of Pharmacy and Research Institute for Drug Development, Pusan National University, Busan, 46241, Republic of Korea.ORCID http://orcid.org/0000-0002-9947-4032
Sang-Min Park *College of Pharmacy, Chungnam National University, Daejeon, 34134, Republic of Korea.ORCID http://orcid.org/0000-0003-2915-0742
Aeyung KimKM Application Center, Korea Institute of Oriental Medicine, Daegu, 41062, Republic of Korea.
No Soo KimKM Convergence Research Division, Korea Institute of Oriental Medicine, Daejeon, 34054, Republic of Korea.
Eun-Hye SeoKorean Medicine (KM) Data Division, Korea Institute of Oriental Medicine, Daejeon, 34054, Republic of Korea.ORCID http://orcid.org/0000-0003-3265-794X
A Yeong LeeKorean Medicine (KM) Data Division, Korea Institute of Oriental Medicine, Daejeon, 34054, Republic of Korea.
Yu Ri KimKM Convergence Research Division, Korea Institute of Oriental Medicine, Daejeon, 34054, Republic of Korea.
Wook Jin KimHerbal Medicine Resources Research Center, Korea Institute of Oriental Medicine, Naju, 58245, Republic of Korea.
Kyu-Won SeoCollege of Pharmacy, Chungnam National University, Daejeon, 34134, Republic of Korea.
Musun ParkKorean Medicine (KM) Data Division, Korea Institute of Oriental Medicine, Daejeon, 34054, Republic of Korea. bmusun@kiom.re.kr.ORCID http://orcid.org/0000-0002-5383-5285
Jin-Mu YiKM Convergence Research Division, Korea Institute of Oriental Medicine, Daejeon, 34054, Republic of Korea. jmyi@kiom.re.kr.
Seongwon ChaKorean Medicine (KM) Data Division, Korea Institute of Oriental Medicine, Daejeon, 34054, Republic of Korea. scha@kiom.re.kr.ORCID http://orcid.org/0000-0001-9012-8718

Funding

Korea Institute of Oriental Medicine (KIOM) KSN2235120
6 · The paper itself

Abstract

Jakyakgamcho-tang (JGT), the simplest form of herbal medicine, comprises Paeoniae Radix (PR) and Glycyrrhizae Radix et Rhizoma (GR). It has been used to treat muscle-related diseases and inflammation. However, its pharmacological effects may vary with the proportions of ingredients and preparatory factors such as the extraction method. Nevertheless, gene expression datasets systematically reflecting these variables are lacking. A total of 513 transcriptome profiles were created with three concentrations and three replicates of RNA-seq data. This dataset structure will enable multidimensional analysis of the effects of various JGT preparation factors on gene expression; these factors include the PR to GR proportional ratio (2:1, 1:1, and 1:2), solvent (water or 70% ethanol), and extraction method (combined or individual extraction method). The HepG2, C2C12, and PC12 cell lines were targeted. All raw and preprocessed data are available through GEO. Standardized metadata and ingredient data are also provided. This dataset provides a foundation for exploring traditional herbal formulations effects on cellular transcriptomic responses and can facilitate the scientific optimization of herbal medicines.

Indexed as

Drugs, Chinese HerbalPaeoniaTranscriptomeAnimalsGlycyrrhizaHep G2 CellsHumansMicePC12 CellsRatsDrugs, Chinese Herbal

Identifiers

PMID41651870
PMCPMC12988177

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.