Evidence map›Paper›PMID 41650959›Full record

ArticleStem cell reports2026

In situ spatial transcriptomics reveals novel markers of the limbal stem cell niche and ocular surface epithelia.

Lamia Nureen, Antonietta Salerno, Stefania D'Agostino, Vanessa Barbaro, Stefano Ferrari, Diego Ponzin, Orazio Vittorio, Nick Di Girolamo

Abstract read
In one paragraph

Article in Stem cell reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lamia NureenSchool of Biomedical Sciences, Faculty of Medicine and Health, University of New South Wales, Sydney, NSW 2052, Australia.
Antonietta SalernoSchool of Biomedical Sciences, Faculty of Medicine and Health, University of New South Wales, Sydney, NSW 2052, Australia.
Stefania D'AgostinoFondazione Banca degli Occhi del Veneto ETS, Venice, Italy.
Vanessa BarbaroFondazione Banca degli Occhi del Veneto ETS, Venice, Italy.
Stefano FerrariFondazione Banca degli Occhi del Veneto ETS, Venice, Italy.
Diego PonzinFondazione Banca degli Occhi del Veneto ETS, Venice, Italy.
Orazio VittorioSchool of Biomedical Sciences, Faculty of Medicine and Health, University of New South Wales, Sydney, NSW 2052, Australia.
Nick Di GirolamoSchool of Biomedical Sciences, Faculty of Medicine and Health, University of New South Wales, Sydney, NSW 2052, Australia. Electronic address: n.digirolamo@unsw.edu.au.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mammalian cornea is endowed with stem cells (SCs) that have lifelong regenerative activity. The niche for these cells is the limbus, and damage to it or its SCs results in limbal stem cell deficiency (LSCD). Despite the numerous studies that employ single-cell RNA sequencing, the identity of these cells remains an enigma principally because their spatial positioning is lost upon dissociation. These adversities were avoided via on-tissue spatial transcriptomics where Krt16 and Nkiras1 were differentially expressed. Krt16 was dynamically expressed in the developing limbus, correlated with slow-cycling label-retaining limbal epithelial SCs and was induced during corneal injury, observations consistent with marking functional SCs. Additionally, we established Nkiras1 as a novel maker of limbal neutrophils. Because current gold-standard treatments for LSCD include SC transplantation, our data will inform future studies in delivering a more reliable standard therapy that incorporates an identifiable SC population to improve clinical outcomes.

Indexed as

BiomarkersEpithelium, CornealLimbus CorneaeStem Cell NicheTranscriptomeAnimalsEpithelial CellsHumansLimbal Stem Cell DeficiencyLimbal Stem CellsMiceSpatial TranscriptomicsStem CellsBiomarkersepitheliumlimbal epithelial stem cellslimbusocular surfacespatial transcriptomics

Identifiers

PMID41650959
PMCPMC12985387

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.