Evidence map›Paper›PMID 41649661›Full record

ReviewCrop health2025

The seed microbiota from an application perspective: an underexplored frontier in plant-microbe interactions.

Inês Rebelo Romão, Joana do Carmo Gomes, Daniel Silva, Juan Ignacio Vilchez

Abstract readReview
In one paragraph

Review in Crop health, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Microbiota assembly inmSystems · 2026
    Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Microbiota characterization ofMicrobiology resource announcements · 2026
    Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Antifungal Potential ofJournal of fungi (Basel, Switzerland) · 2026
    Article
  12. Article
  13. Article
  14. Editorial: Prospecting microbial technologies for agricultural sustainability.Frontiers in bioengineering and biotechnology · 2026
    Article
  15. Review
  16. Review
  17. Mechanism ofFrontiers in microbiology · 2026
    Article
  18. Article
  19. Article
  20. Exploring the Bacterial Microbiota of Seeds.Microbial biotechnology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Inês Rebelo RomãoInstituto de Tecnologia Química E Biológica (ITQB), NOVA, iPlantMicro Lab. Oeiras, Lisbon, Portugal.
Joana do Carmo GomesInstituto de Tecnologia Química E Biológica (ITQB), NOVA, iPlantMicro Lab. Oeiras, Lisbon, Portugal.
Daniel SilvaInstituto de Tecnologia Química E Biológica (ITQB), NOVA, iPlantMicro Lab. Oeiras, Lisbon, Portugal.
Juan Ignacio VilchezInstituto de Tecnologia Química E Biológica (ITQB), NOVA, iPlantMicro Lab. Oeiras, Lisbon, Portugal. nacho.vilchez@itqb.unl.pt.ORCID http://orcid.org/0000-0003-4524-7384

Funding

Fundação para a Ciência e a Tecnologia LA/P/0087/2020Fundação para a Ciência e a Tecnologia UIDB/04551/2020Fundação para a Ciência e a Tecnologia UIDP/04551/2020
6 · The paper itself

Abstract

Seed-associated microbiota represent a critical yet underexplored frontier in plant-microbe interactions, offering unique insights into plant health, resilience, and development. Unlike the soil or rhizosphere microbiome, the seed microbiota is closely tied to plant reproduction, facilitating both vertical and horizontal transmission of microbes. These microbial communities influence key plant processes, including germination, stress tolerance, nutrient acquisition, and pathogen resistance, providing plants with a pre-assembled microbial consortium tailored to their needs. Despite recent advances, significant gaps remain in understanding how seed-associated microbes are acquired, their ecological dynamics, and their functional roles. High-throughput sequencing, metagenomics, and spatial imaging techniques have revealed the diversity and complexity of the seed microbiota, emphasizing their potential for agricultural innovation. This research highlights the importance of these communities in shaping plant resilience and productivity, yet questions about their ecological and evolutionary significance persist. The present review synthesizes current knowledge on the composition, inheritance mechanisms, and functional roles of the seed microbiota. It also explores strategies to harness these microbes for sustainable agriculture, including microbiome engineering and breeding for microbial compatibility. By addressing these gaps, seed microbiota research could revolutionize sustainable agriculture, enhancing crop resilience and reducing reliance on chemical inputs.

Indexed as

BioinoculantsMicrobial inheritancePlant–microbe interactionsSeed-borne endophytesSeed microbiota

Identifiers

PMID41649661
PMCPMC12825913

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.