Evidence map›Paper›PMID 41648353›Full record

ArticlebioRxiv : the preprint server for biology2026

Super-resolved, three-dimensional spatial transcriptomics reveals cell-type and brain-region-specific modulation of key epitranscriptomic switches following adolescent alcohol exposure.

Jamuna Tandukar, Anam Islam, Emir Malovic, Bisma Afzal, Huaibo Zhang, Subhash C Pandey, Ruixuan Gao

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jamuna TandukarDepartment of Biological Sciences, University of Illinois Chicago, Chicago, IL 60607, USA.ORCID 0000-0002-1154-5773
Anam IslamDepartment of Biological Sciences, University of Illinois Chicago, Chicago, IL 60607, USA.ORCID 0000-0002-2815-2458
Emir MalovicCenter for Alcohol Research in Epigenetics (CARE), Department of Psychiatry, University of Illinois Chicago, Chicago, IL 60622, USA.ORCID 0000-0003-2291-2716
Bisma AfzalDepartment of Biological Sciences, University of Illinois Chicago, Chicago, IL 60607, USA.ORCID 0009-0007-3956-8591
Huaibo ZhangCenter for Alcohol Research in Epigenetics (CARE), Department of Psychiatry, University of Illinois Chicago, Chicago, IL 60622, USA.
Subhash C PandeyCenter for Alcohol Research in Epigenetics (CARE), Department of Psychiatry, University of Illinois Chicago, Chicago, IL 60622, USA.ORCID 0000-0001-7139-8464
Ruixuan GaoDepartment of Biological Sciences, University of Illinois Chicago, Chicago, IL 60607, USA.ORCID 0000-0001-7137-2512

Funding

Pilot Project Program P50AA022538 · NIAAA · UNIVERSITY OF ILLINOIS AT CHICAGO · PI Katherine Miles Johnston McMurray · 2015 to 2026
$21.3M
Role of AIE in Epigenetic and Behavioral Changes at AdulthoodU01AA019971 · NIAAA · UNIVERSITY OF ILLINOIS AT CHICAGO · PI PANDEY, SUBHASH C. · 2010 to 2024
$5.6M
2/2 NADIA U24 Epigenetic/Molecular CoreU24AA024605 · NIAAA · UNIVERSITY OF ILLINOIS AT CHICAGO · PI PANDEY, SUBHASH C. · 2015 to 2024
$3.6M
Alcohol Research Training in epigenetics and pathophysiology (ARTEP)T32AA026577 · NIAAA · UNIVERSITY OF ILLINOIS AT CHICAGO · PI SUBHASH C. PANDEY · 2019 to 2026
$2.7M
A biochemical approach towards subcellular, label-free molecular imagingDP2MH136390 · NIMH · UNIVERSITY OF ILLINOIS AT CHICAGO · PI Ruixuan Gao · 2023 to 2026
$2.3M
BLRD VA IK6 BX006030NIAAA NIH HHS P50 AA022538NIAAA NIH HHS T32 AA026577NIAAA NIH HHS U01 AA019971NIAAA NIH HHS U24 AA024605NIMH NIH HHS DP2 MH136390
6 · The paper itself

Abstract

Epitranscriptomic mechanisms dynamically regulate neuronal function through gene expression, but their precise roles in neuropsychiatric and neurological disorders remain to be fully elucidated. A major obstacle to advancing such studies is the absence of a methodology for precise, cell-type and brain-region-specific quantification of critical epitranscriptomic regulators under these complex brain conditions. To overcome this challenge, we developed a super-resolved, three-dimensional spatial transcriptomics method to quantify key epitranscriptomic switches in intact brains. Using this method, we quantified the expression of

Identifiers

PMID41648353
PMCPMC12871839

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.