Evidence map›Paper›PMID 41647647›Full record

ArticleFrontiers in plant science2025

Reference based transcriptome assembly of

Sona Charles, Muhammed Fayad Abdulkabeer, K S Krishnamurthy, Theertha Azhakoth Parambathu, T E Sheeja

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in plant science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Deciphering Stress Resilience in Black Pepper (International journal of molecular sciences · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sona CharlesDivision of Crop Improvement and Biotechnology, Indian Council for Agricultural Research (ICAR)- Indian Institute of Spices Research, Kozhikode, India.
Muhammed Fayad AbdulkabeerDivision of Crop Improvement and Biotechnology, Indian Council for Agricultural Research (ICAR)- Indian Institute of Spices Research, Kozhikode, India.
K S KrishnamurthyDivision of Crop Production and Post-Harvest Technology, Indian Council for Agricultural Research (ICAR)- Indian Institute of Spices Research, Kozhikode, India.
Theertha Azhakoth ParambathuDivision of Crop Production and Post-Harvest Technology, Indian Council for Agricultural Research (ICAR)- Indian Institute of Spices Research, Kozhikode, India.
T E SheejaDivision of Crop Improvement and Biotechnology, Indian Council for Agricultural Research (ICAR)- Indian Institute of Spices Research, Kozhikode, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Black pepper ( Methods: This study focusses on the molecular basis of drought tolerance in black pepper through identification of differentially expressed genes (DEGs) by comparative transcriptome analysis involving drought-tolerant Accession (No. 4226) under control and water deficit conditions, and validation of these DEGs by co-expression analysis involving drought-tolerant (IISR Thevam and Acc. No. 4226) and drought-susceptible (Panniyur-1) genotypes under water-deficit conditions. Results: Reference based assembly of RNAseq data and differential gene expression analysis revealed 2,780 DEGs such as Discussion: Validation of key DEGs such as catalase, defensin,

Indexed as

black pepperdroughtspicesstress responsetranscriptome

Identifiers

PMID41647647
PMCPMC12867853

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.