Evidence map›Paper›PMID 41646983›Full record

ArticleFrontiers in immunology2025

Single-cell and machine learning integration reveals OS-driven CCND1 promotes an aggressive phenotype in papillary thyroid carcinoma.

Jiaxi Wang, Qingyi Zhu, Jingyi Bie, Yueyu Han, Hanqing Liu, Chuang Chen

Abstract read
In one paragraph

Article in Frontiers in immunology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jiaxi Wang *Department of Breast and Thyroid Surgery, Renmin Hospital of Wuhan University, Wuhan, China.
Qingyi Zhu *Department of Cardiovascular Surgery, Renmin Hospital of Wuhan University, Wuhan, China.
Jingyi BieCollege of Medicine, Yan'an University, Yan'an, China.
Yueyu HanDepartment of Breast and Thyroid Surgery, Renmin Hospital of Wuhan University, Wuhan, China.
Hanqing LiuDepartment of Thyroid Surgery, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China.
Chuang ChenDepartment of Breast and Thyroid Surgery, Renmin Hospital of Wuhan University, Wuhan, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Papillary thyroid carcinoma (PTC) is the most common thyroid malignancy, with rising incidence worldwide. Oxidative stress (OS), characterized by an imbalance between reactive oxygen species (ROS) and antioxidant defenses, plays a critical role in tumor initiation and progression. However, the specific relationship between OS and PTC remains underexplored, highlighting the need for further investigation. This study aims to identify OS-related biomarkers in PTC that could potentially be used for clinical diagnosis and treatment. Methods: Single-cell RNA sequencing data from PTC and normal thyroid tissues were analyzed using multiple gene set scoring and differential expression methods to evaluate OS levels across different cell types. Integrated bioinformatics analysis, including WGCNA and machine learning models, was employed to select candidate biomarkers, which were then validated in independent datasets. Pseudotime analysis and CellChat were conducted to explore cell dynamics within the tumor microenvironment. An oxidative stress model was established in TPC-1 cells using hydrogen peroxide treatment. The levels of OS and changes in tumor cell proliferative capacity were assessed through western blotting, immunoblotting, ROS detection, and cell viability assays. Results: The study revealed that Conclusion:

Indexed as

Cyclin D1Machine LearningOxidative StressThyroid Cancer, PapillaryThyroid NeoplasmsBiomarkers, TumorCell Line, TumorCell ProliferationGene Expression Regulation, NeoplasticHumansPhenotypeReactive Oxygen SpeciesSignal TransductionSingle-Cell AnalysisSingle-Cell Gene Expression AnalysisTumor MicroenvironmentBiomarkers, TumorCCND1 protein, humanCyclin D1Reactive Oxygen SpeciesCCND1oxidative stresspapillary thyroid carcinomasingle-cell RNA sequencingSox4TFF3

Identifiers

PMID41646983
PMCPMC12871538

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.