Evidence map›Paper›PMID 41646054›Full record

ArticleiGIE : innovation, investigation and insights2023

Deep learning-powered generation of artificial endoscopic images of GI tract ulcers.

Deepak Bajhaiya, Sujatha Narayanan Unni, A K Koushik

Abstract read
In one paragraph

Article in iGIE : innovation, investigation and insights, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Deepak BajhaiyaBiophotonics Laboratory, Department of Applied Mechanics and Biomedical Engineering, IIT Madras, Chennai, India.
Sujatha Narayanan UnniBiophotonics Laboratory, Department of Applied Mechanics and Biomedical Engineering, IIT Madras, Chennai, India.
A K KoushikDepartment of Gastroenterology, Sri Ramachandra Medical Centre and Research Institute, Chennai, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background and Aims: Annually, 4 million people are affected by ulcers in the GI tract, and poorly managed ulcers can lead to adverse events that may increase the risk of developing fatal diseases such as gastric cancer, GI bleeding, ulcerative colitis, and other conditions. Deep learning-based computer-aided diagnostics is essential for automating the diagnosis of such illnesses. It aids clinicians in diagnosis by reducing the time of diagnosis and lowering diagnostic errors. Data shortage is anticipated in endoscopy settings, and small data sets prevent the performance of the deep learning model from being generalized. The current study addresses data scarcity by expanding the available data through the artificial generation of new data. Methods: This study exploits the combination of the generative adversarial network (GAN) and variational autoencoders (VAE) and develops a VAE-GAN architecture to generate artificial endoscopic images. VAE-GAN offers resilience toward mode collapse, vanishing gradient, instability, and non-convergence. The generated images were tested against the trained DenseNet121 model with a higher classification threshold for ulcer identification and estimated precision and recall scores that capture the quality and diversity of the generated images, respectively. Furthermore, the generated images were also presented and compared with the clinical interpretation by an expert. The effectiveness of data augmentation by VAE-GAN was also evaluated with the developed 5-layer convolutional neural network (CNN) model for ulcer classification. Results: The proposed VAE-GAN architecture synthesized artificial realistic endoscopic images. With the trained DenseNet121 model under a higher threshold for ulcer detection, the generated images of ulcers achieved 99% precision and 92% recall. The expert achieved 57.1% classification accuracy for artificial versus real ulcer examination. The 5-layer CNN model achieved 94% classification accuracy on the test data set without data augmentation. With data augmentation, accuracy improved to 100%. Conclusions: The proposed VAE-GAN architecture produced promising results in synthesizing artificial endoscopic images. The higher precision and good recall showed that artificial images are high quality and diversified. The expert also infers that the generated images are of good quality. Hence, the proposed VAE-GAN architecture is expected to solve the problem of data insufficiency for training deep learning models to achieve generalized performances. In addition, data augmentation using VAE-GAN expanded the data set and reduced data biases to some extent, as indicated by the observed score with the 5-layer CNN model.

Identifiers

PMID41646054
PMCPMC12850780

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.