Evidence map›Paper›PMID 41645577›Full record

ArticleThe New phytologist2026

Small RNAs regulation and genomic harmony: insights into allopolyploid evolution in marsh orchids (Dactylorhiza).

Mimmi C Eriksson, Matthew Thornton, Emiliano Trucchi, Thomas M Wolfe, Francisco Balao, Mikael Hedrén, Ovidiu Paun

Abstract read
In one paragraph

Article in The New phytologist, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mimmi C ErikssonBotany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030, Vienna, Austria.ORCID 0000-0002-9548-8226
Matthew ThorntonBotany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030, Vienna, Austria.
Emiliano TrucchiBotany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030, Vienna, Austria.ORCID 0000-0002-1270-5273
Thomas M WolfeBotany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030, Vienna, Austria.ORCID 0000-0002-1509-0147
Francisco BalaoBotany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030, Vienna, Austria.ORCID 0000-0003-2104-3846
Mikael HedrénDepartment of Biology, Lund University, Sölvegatan 37, S-22362, Lund, Sweden.ORCID 0000-0001-8194-4617
Ovidiu PaunBotany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030, Vienna, Austria.ORCID 0000-0002-8295-4937

Funding

Austrian Science Fund W1225-B20Austrian Science Fund Y661-B16
6 · The paper itself

Abstract

Hybridization and polyploidy are major drivers of plant diversification, often accompanied by shifts in gene expression and genome composition. Small RNAs (smRNAs) are thought to influence such genomic changes, particularly through their interactions with transposable elements (TEs). We quantified smRNAs in established sibling allopolyploids Dactylorhiza majalis and D. traunsteineri and their diploid progenitors to assess how independent allopolyploidization events shaped smRNA landscapes. Despite independent origins, the allotetraploids exhibited substantial overlap in smRNA composition, including transgressive accumulation of smRNAs near genes related to transcriptional regulation, cell division, and stress response. Consistently, TE-associated 24 nt smRNAs more closely resembled the paternal and larger genome, while shorter smRNAs typically reflected the maternal and smaller genome. Nevertheless, distinct patterns were also evident: the older D. majalis showed greater accumulation of smRNAs near genes involved in transcriptional and translational regulation, while the younger D. traunsteineri displayed stronger non-additive patterns, suggesting ongoing resolution of post-polyploid meiotic and mitotic instability. Our results reveal both convergence and divergence in smRNA landscapes among independently formed allopolyploids. Our study highlights the central role of smRNAs in resolving genomic conflict, with possible implications for functional divergence and ecological innovation during polyploid evolution.

Indexed as

Evolution, MolecularGenome, PlantOrchidaceaePolyploidyRNA, PlantDNA Transposable ElementsGene Expression Regulation, PlantDNA Transposable ElementsRNA, PlantallopolyploidyDactylorhizagene regulationmarsh orchidssmall RNAssubgenome dominancetransposable elements

Identifiers

PMID41645577
PMCPMC12961254

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.